MmuEX6073820 @ mm10
Exon Skipping
Gene
ENSMUSG00000028125 | Abca4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:MGI Symbol;Acc:MGI:109424]
Coordinates
chr3:122086559-122087933:+
Coord C1 exon
chr3:122086559-122086675
Coord A exon
chr3:122087294-122087491
Coord C2 exon
chr3:122087728-122087933
Length
198 bp
Sequences
Splice sites
3' ss Seq
ATAATGTTCTTCTTCCCAAGGAC
3' ss Score
7.78
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GCCAACTCAACTTTTGAAGAACTGGATCGAGTTAGGAAGTTGGTAAAAGCCTGGGAGGAAGTGGGGCCCCAGATCTGGTACTTCTTTGAGAAGAGCACACAGATGACCGTGATCCGA
Seq A exon
GACACCCTGCAGCACCCAACCGTCAAAGACTTCATAAATAGGCAGCTCGGAGAAGAAGGCATTACCACCGAAGCCGTATTAAACTTCTTCTCTAACGGTCCCCAAGAGAAGCAGGCTGATGATATGACCAGCTTTGACTGGAGGGACATATTCAACATCACTGACCGATTCCTACGCTTGGCTAATCAATACCTGGAG
Seq C2 exon
CACACATCCATTCCTAGATATCTCCTGTCTGCCATTGTTCCAATGACCTTCTGTTGGCCAGTATCCACCAAACCTTGAGTCTGAGTCTCGTCGATTACTGGACACCCTTACTCCAAAGTCTTAAGGGCATGTCAGATTCAGCATGTGTCAAAAAATAAACTCATGTTCTCCTTTCCTAGTAAATTCCTGCACTTCTAGTGCCAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028125-'15-23,'15-16,21-23=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGATCGAGTTAGGAAGTTGG
R:
CATGCTGAATCTGACATGCCCT
Band lengths:
242-440
Functional annotations
There are 1 annotated functions for this event
PMID: 11320094
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000564; ELM sequence: FNITDR; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types