RnoEX6011368 @ rn6
Exon Skipping
Gene
ENSRNOG00000012892 | Abca4
Description
ATP binding cassette subfamily A member 4 [Source:RGD Symbol;Acc:1309445]
Coordinates
chr2:225690365-225707569:+
Coord C1 exon
chr2:225690365-225690481
Coord A exon
chr2:225691088-225691285
Coord C2 exon
chr2:225707364-225707569
Length
198 bp
Sequences
Splice sites
3' ss Seq
GCCTTTTTTTTCTTCCCAAGGAT
3' ss Score
10
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GCCAACTCAACTTTTGAAGAACTGGATCGAGTTAGGAAGCTGGTCAAAGCCTGGGAGGAAGTAGGGCCCCAGATTTGGTACTTCTTTGAGAAGAGCACACAGATGGCCGTGATCAGA
Seq A exon
GATACCCTGCAGCACCCAACAGTAAAAGACTTCATAAATAGGCAGCTTGGAGAAGAAGGCATTACCACTGAAGCCATATTAAATTTCTTCCCTAATGGTCCCCGAGAGAACCAAGCTGATGACATGACCAGCTTTGACTGGAGGGATATATTCAACATCACTGACCGCTTCCTGCGCCTGGCTAATCAATACCTGGAG
Seq C2 exon
TGTCTGGTCCTGGATAAGTTTGAAAGTTACGATGATGAAGTTCAGCTCACCCAGCGAGCCCTGTCTCTCCTGGAGGAGAACAGGTTCTGGGCTGGAGTGGTATTCCCTGACATGTATCCGTGGACCAGCTCCCTACCTCCCCATGTGAAGTACAAGATTCGGATGGACATTGATGTGGTGGAGAAGACCAATAAGATCAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012892-'12-15,'12-12,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF126982=ABC2_membrane_3=PU(18.4=88.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATCGAGTTAGGAAGCTGGT
R:
ACTTCACATGGGGAGGTAGGG
Band lengths:
246-444
Functional annotations
There are 1 annotated functions for this event
PMID: 11320094
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000564; ELM sequence: FNITDR; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]