DreEX6095569 @ danRer10
Exon Skipping
Gene
ENSDARG00000057169 | abca4a
Description
ATP-binding cassette, sub-family A (ABC1), member 4a [Source:ZFIN;Acc:ZDB-GENE-050517-3]
Coordinates
chr24:28516620-28522210:+
Coord C1 exon
chr24:28516620-28516736
Coord A exon
chr24:28516817-28517014
Coord C2 exon
chr24:28522005-28522210
Length
198 bp
Sequences
Splice sites
3' ss Seq
TGCTGTGCTTCAAATGGCAGGAC
3' ss Score
6.16
5' ss Seq
GAGGTATCA
5' ss Score
6.35
Exon sequences
Seq C1 exon
GCGAACACCACCTTTGAGGAGTTAGAAAGGCTCAGAAACATGGGTCGGGCCTGGGAGGAGGTGGGACCACAGATCTGGAGCTTCTTTCAGGACAGTGTGCAGATAAACATGCTTCGG
Seq A exon
GACTCCATCAGAAACCCAACAGTGATGGATCATATCAACAAAGGCCTCAGAAATGCTGCGTTCACGGGTCAACACATCCTCAACTTCTTGTACAGCGGGCCAGAGGAGGACAGAGAGCAGGACATGCCAAACTTTGACTGGAGGAACATCTTTAACCTCACCGACCAAGTGATTCGACTCATAAACCGATACGGCGAG
Seq C2 exon
TGTCTAGTCCTGGACAAGTTCTCCAGTATCTCTGATGAGGATCAGCTCACCCATCGAGCGCTGAACCTTCTAGAGGAGGGCAAGTTCTGGGCCGGCCTAGTGTTTGTTGACATGTACTCCTGGACCACCAAAGTTCCCCCTCATGTCAAAGTCAAGATTCGCATGGACATTGATGTCGTGGAGCGCACCAACAAGATTAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057169-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAACACCACCTTTGAGGAG
R:
GGAACTTTGGTGGTCCAGGAG
Band lengths:
254-452
Functional annotations
There are 1 annotated functions for this event
PMID: 11320094
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000564; ELM sequence: FNITDR; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]