BtaEX6016520 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018010 | ABCA4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:HGNC Symbol;Acc:HGNC:34]
Coordinates
chr3:49589289-49604191:+
Coord C1 exon
chr3:49589289-49589405
Coord A exon
chr3:49590270-49590467
Coord C2 exon
chr3:49603986-49604191
Length
198 bp
Sequences
Splice sites
3' ss Seq
TTGTATTGCTTCTTCCCAAGGAC
3' ss Score
6.59
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GCTAATTCGACGTTTGAAGAGCTGGAGCGTGTCAGGAAGTTGGTCAAAGTCTGGGAAGAAGTAGGGCCCCAGATCTGGTACTTCTTTGACAAGAGCACACAGATGAGCATGATCAGA
Seq A exon
GACACTCTGGAGAACCCAACAGTAAAAGCTTTTTGGAATAGGCAGCTTGGTGAGGAAGGCATCACTGCTGAAGCCGTCCTGAACTTCCTCTATAACGGGCCTCGAGAGGGCCAGGCTGACGATGTGGACAACTTCAACTGGAGGGATATATTTAACATCACTGATCGTGCCCTACGCCTGGCTAATCAATATCTGGAG
Seq C2 exon
TGCTTGATCCTGGATAAGTTTGAAAGCTACGATGATGAATTTCAACTCACTCAGCGAGCCCTGTCCCTGCTGGAGGAAAACAGGTTCTGGGCTGGAGTGGTATTTCCGGACATGCACCCCTGGACCAGTTCCTTACCACCCCATGTGAAGTACAAGATCCGAATGGACATAGATGTGGTGGAGAAAACCAATAAGATCAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018010-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF126982=ABC2_membrane_3=PU(4.9=20.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGACGTTTGAAGAGCTGGAG
R:
ATGGGGTGGTAAGGAACTGGT
Band lengths:
255-453
Functional annotations
There are 1 annotated functions for this event
PMID: 11320094
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000564; ELM sequence: FNITDR; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]