GgaEX6044208 @ galGal3
Exon Skipping
Gene
ENSGALG00000005752 | F1N8D7_CHICK
Description
NA
Coordinates
chr8:14374792-14381571:+
Coord C1 exon
chr8:14374792-14374908
Coord A exon
chr8:14375687-14375884
Coord C2 exon
chr8:14381366-14381571
Length
198 bp
Sequences
Splice sites
3' ss Seq
GTTCTAATATGTTTCCTCAGGAC
3' ss Score
8.89
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GCAAACTCCACTTTTGAAGAGCTTGAACGCCTCAGGCTGTTGACCAAAGCTTGGGAAGAAGTAGGACCTCAGCTGTGGTACTTCTTCCAAAATAGCCTGCAAATGAATATGATCCGT
Seq A exon
GACTCTCTGAAGCACTCTACAGTGAGGGACTTCCTGAACAGTCAGCTGGGTGCTGAAGGCTTAACTGCTGAATACATTATCAACTTTCTCCACAATGGGCCTCCTGGAAGTAGGGAGAAAGGAGCAGTAGATTTTGACTGGAGGAATATCTTCATTGCTGCAGACCAAGTTCTGCGTTTGGTCAGTCAGTATCTGGAG
Seq C2 exon
TGCTTGACCCTGGATAAATTTGAAGGTTATCATGATGAAACCCAGCTGACTCATCAAGCCCTTCATTTACTAGAGGAAAACAAATTCTGGGCTGGTGTGGTTTTTCCAGATATAGACCCTACAAGAAAAAGTCTTCCACCACATGTGAAATACAAGATTCGGATGGACATAGATGCAGTGGAGAAAACAAATAAAATCAAAGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005752-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126982=ABC2_membrane_3=PU(2.0=10.6)
C2:
PF126982=ABC2_membrane_3=FE(19.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAGAAGTAGGACCTCAGCT
R:
CCACTGCATCTATGTCCATCCG
Band lengths:
246-444
Functional annotations
There are 1 annotated functions for this event
PMID: 11320094
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000564; ELM sequence: FNITDR; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]