MmuEX6073820 @ mm9
Exon Skipping
Gene
ENSMUSG00000028125 | Abca4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:MGI Symbol;Acc:MGI:109424]
Coordinates
chr3:121789477-121805798:+
Coord C1 exon
chr3:121789477-121789593
Coord A exon
chr3:121790212-121790409
Coord C2 exon
chr3:121805593-121805798
Length
198 bp
Sequences
Splice sites
3' ss Seq
ATAATGTTCTTCTTCCCAAGGAC
3' ss Score
7.78
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GCCAACTCAACTTTTGAAGAACTGGATCGAGTTAGGAAGTTGGTAAAAGCCTGGGAGGAAGTGGGGCCCCAGATCTGGTACTTCTTTGAGAAGAGCACACAGATGACCGTGATCCGA
Seq A exon
GACACCCTGCAGCACCCAACCGTCAAAGACTTCATAAATAGGCAGCTCGGAGAAGAAGGCATTACCACCGAAGCCGTATTAAACTTCTTCTCTAACGGTCCCCAAGAGAAGCAGGCTGATGATATGACCAGCTTTGACTGGAGGGACATATTCAACATCACTGACCGATTCCTACGCTTGGCTAATCAATACCTGGAG
Seq C2 exon
TGTCTGGTCCTGGATAAGTTTGAAAGTTATGATGATGAAGTGCAGCTCACCCAACGAGCCCTGTCTCTCCTGGAGGAGAACAGGTTCTGGGCCGGAGTGGTGTTCCCTGGCATGTATCCCTGGGCCAGCTCCTTACCTCCTCATGTGAAGTACAAGATTCGGATGGACATAGATGTGGTGGAGAAGACCAATAAGATCAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028125-'12-15,'12-12,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF126982=ABC2_membrane_3=PU(12.1=53.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAAAAGCCTGGGAGGAAGTGG
R:
CCACCACATCTATGTCCATCCG
Band lengths:
256-454
Functional annotations
There are 1 annotated functions for this event
PMID: 11320094
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000564; ELM sequence: FNITDR; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: