MmuEX6073821 @ mm9
Exon Skipping
Gene
ENSMUSG00000028125 | Abca4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:MGI Symbol;Acc:MGI:109424]
Coordinates
chr3:121788452-121790409:+
Coord C1 exon
chr3:121788452-121788591
Coord A exon
chr3:121789477-121789593
Coord C2 exon
chr3:121790212-121790409
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTGTGTCTATTTTAGGCC
3' ss Score
13.31
5' ss Seq
CGAGTAAGG
5' ss Score
6.93
Exon sequences
Seq C1 exon
CATCCTTTTGTAATTCATTGATCCAGAGCCTGGAGTCAAACCCTTTAACCAAAATAGCCTGGAGGGCGGCAAAGCCATTGCTGATGGGAAAAATCCTCTTTACTCCAGATTCCCCTGCTGCTCGAAGGATAATGAAGAAT
Seq A exon
GCCAACTCAACTTTTGAAGAACTGGATCGAGTTAGGAAGTTGGTAAAAGCCTGGGAGGAAGTGGGGCCCCAGATCTGGTACTTCTTTGAGAAGAGCACACAGATGACCGTGATCCGA
Seq C2 exon
GACACCCTGCAGCACCCAACCGTCAAAGACTTCATAAATAGGCAGCTCGGAGAAGAAGGCATTACCACCGAAGCCGTATTAAACTTCTTCTCTAACGGTCCCCAAGAGAAGCAGGCTGATGATATGACCAGCTTTGACTGGAGGGACATATTCAACATCACTGACCGATTCCTACGCTTGGCTAATCAATACCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028125-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCCTGGAGTCAAACCCTT
R:
GCTGGTCATATCATCAGCCTGC
Band lengths:
248-365
Functional annotations
There are 2 annotated functions for this event
PMID: 11320094
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000562; ELM sequence: ANSTFE; Overlap: FULL
PMID: 11320094
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000563; ELM sequence: DNSTQM; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: