DreEX6026115 @ danRer10
Exon Skipping
Gene
ENSDARG00000062661 | abca4b
Description
ATP-binding cassette, sub-family A (ABC1), member 4b [Source:ZFIN;Acc:ZDB-GENE-050517-4]
Coordinates
chr2:15572607-15574698:+
Coord C1 exon
chr2:15572607-15572746
Coord A exon
chr2:15572858-15572974
Coord C2 exon
chr2:15574501-15574698
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTTCTCCAGGCC
3' ss Score
11.3
5' ss Seq
CGGGTAACA
5' ss Score
5.3
Exon sequences
Seq C1 exon
CTCCATTCTGTAATGCATTAATGCAGAACCTGGAGTCAAACCCTATTACCAAAATTGTGTGGAACTCAGTGAAGCCTCTTGTGATGGGGAAGATCCTGTACACTCCAGACTCTCCGGCTGTCAGAAAAATAATAAAGAGT
Seq A exon
GCCAACACCACTTTTGAGGAGCTTGAGAGGTTGCAGAAAATAGGGAAGGTCTGGGAAGAGCTGGGACCACAGCTCTGGGATTTCTTTCAAAACAGCATCCAAATGAACATGATACGG
Seq C2 exon
GACACACTTAGGAACCCCACAGTGATGGACTTTTTGGACAGGCGTCTTAGAGAAACAGAGTTCTCCACCAAAGACATCCTCAACTTCCTGCACAATGGCCCAGAGGGGGAGAGATTCATGAACATGACAAGCTTTGACTGGAGTGATGTCTTCAGATTGGCTGACCAGGCTATTCGGATGTTTAACCGCTACAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062661-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGCCTCTTGTGATGGGG
R:
CATCCGAATAGCCTGGTCAGC
Band lengths:
252-369
Functional annotations
There are 2 annotated functions for this event
PMID: 11320094
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000562; ELM sequence: ANSTFE; Overlap: FULL
PMID: 11320094
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000563; ELM sequence: DNSTQM; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]