GgaEX6044209 @ galGal4
Exon Skipping
Gene
ENSGALG00000005752 | ABCA4
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N8D7]
Coordinates
chr8:12624069-12626451:+
Coord C1 exon
chr8:12624069-12624208
Coord A exon
chr8:12625359-12625475
Coord C2 exon
chr8:12626254-12626451
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTCCTGTTCTTATTCTTCAGGCA
3' ss Score
10.27
5' ss Seq
CGTGTATGT
5' ss Score
5.08
Exon sequences
Seq C1 exon
CACCCTTTTGCAATGAGTTGATTCAGAACTTGGAATCAAACCCTCTAACCAAAATAGCCTGGAGTGCTGTGAAGCCACTGCTGATGGGAAAAATTCTTTTTGCTCCCAATTCACCTCCTGTACGGCAAATCATTAAAAAT
Seq A exon
GCAAACTCCACTTTTGAAGAGCTTGAACGCCTCAGGCTGTTGACCAAAGCTTGGGAAGAAGTAGGACCTCAGCTGTGGTACTTCTTCCAAAATAGCCTGCAAATGAATATGATCCGT
Seq C2 exon
GACTCTCTGAAGCACTCTACAGTGAGGGACTTCCTGAACAGTCAGCTGGGTGCTGAAGGCTTAACTGCTGAATACATTATCAACTTTCTCCACAATGGGCCTCCTGGAAGTAGGGAGAAAGGAGCAGTAGATTTTGACTGGAGGAATATCTTCATTGCTGCAGACCAAGTTCTGCGTTTGGTCAGTCAGTATCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005752-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF126982=ABC2_membrane_3=PU(2.0=10.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACTGCTGATGGGAAAAAT
R:
AAACGCAGAACTTGGTCTGCA
Band lengths:
246-363
Functional annotations
There are 2 annotated functions for this event
PMID: 11320094
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000562; ELM sequence: ANSTFE; Overlap: FULL
PMID: 11320094
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000563; ELM sequence: DNSTQM; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]