RnoEX0004876 @ rn6
Exon Skipping
Gene
ENSRNOG00000012892 | Abca4
Description
ATP binding cassette subfamily A member 4 [Source:RGD Symbol;Acc:1309445]
Coordinates
chr2:225689238-225691285:+
Coord C1 exon
chr2:225689238-225689320
Coord A exon
chr2:225690365-225690481
Coord C2 exon
chr2:225691088-225691285
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTCTGTGTGTCTACTTTTAGGCC
3' ss Score
10.7
5' ss Seq
AGAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
CCTGGAGGGCAACAAAGCCATTGCTGATGGGAAAAATCCTCTTTACTCCAGATTCCCCTGCTGCTCGAAGGCTGCTGAAGAAC
Seq A exon
GCCAACTCAACTTTTGAAGAACTGGATCGAGTTAGGAAGCTGGTCAAAGCCTGGGAGGAAGTAGGGCCCCAGATTTGGTACTTCTTTGAGAAGAGCACACAGATGGCCGTGATCAGA
Seq C2 exon
GATACCCTGCAGCACCCAACAGTAAAAGACTTCATAAATAGGCAGCTTGGAGAAGAAGGCATTACCACTGAAGCCATATTAAATTTCTTCCCTAATGGTCCCCGAGAGAACCAAGCTGATGACATGACCAGCTTTGACTGGAGGGATATATTCAACATCACTGACCGCTTCCTGCGCCTGGCTAATCAATACCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012892_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGATGGGAAAAATCCTCT
R:
GGTATTGATTAGCCAGGCGCA
Band lengths:
255-372
Functional annotations
There are 2 annotated functions for this event
PMID: 11320094
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000562; ELM sequence: ANSTFE; Overlap: FULL
PMID: 11320094
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000563; ELM sequence: DNSTQM; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]