GgaEX6044209 @ galGal3
Exon Skipping
Gene
ENSGALG00000005752 | F1N8D7_CHICK
Description
NA
Coordinates
chr8:14373502-14375884:+
Coord C1 exon
chr8:14373502-14373641
Coord A exon
chr8:14374792-14374908
Coord C2 exon
chr8:14375687-14375884
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTCCTGTTCTTATTCTTCAGGCA
3' ss Score
10.27
5' ss Seq
CGTGTATGT
5' ss Score
5.08
Exon sequences
Seq C1 exon
CACCCTTTTGCAATGAGTTGATTCAGAACTTGGAATCAAACCCTCTAACCAAAATAGCCTGGAGTGCTGTGAAGCCACTGCTGATGGGAAAAATTCTTTTTGCTCCCAATTCACCTCCTGTACGGCAAATCATTAAAAAT
Seq A exon
GCAAACTCCACTTTTGAAGAGCTTGAACGCCTCAGGCTGTTGACCAAAGCTTGGGAAGAAGTAGGACCTCAGCTGTGGTACTTCTTCCAAAATAGCCTGCAAATGAATATGATCCGT
Seq C2 exon
GACTCTCTGAAGCACTCTACAGTGAGGGACTTCCTGAACAGTCAGCTGGGTGCTGAAGGCTTAACTGCTGAATACATTATCAACTTTCTCCACAATGGGCCTCCTGGAAGTAGGGAGAAAGGAGCAGTAGATTTTGACTGGAGGAATATCTTCATTGCTGCAGACCAAGTTCTGCGTTTGGTCAGTCAGTATCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005752-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF126982=ABC2_membrane_3=PU(2.0=10.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACTGCTGATGGGAAAAAT
R:
AAACGCAGAACTTGGTCTGCA
Band lengths:
246-363
Functional annotations
There are 2 annotated functions for this event
PMID: 11320094
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000562; ELM sequence: ANSTFE; Overlap: FULL
PMID: 11320094
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000563; ELM sequence: DNSTQM; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]