BtaEX6016521 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018010 | ABCA4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:HGNC Symbol;Acc:HGNC:34]
Coordinates
chr3:49588531-49590467:+
Coord C1 exon
chr3:49588531-49588670
Coord A exon
chr3:49589289-49589405
Coord C2 exon
chr3:49590270-49590467
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTGTCTCTGTCTGATTTTAGGCT
3' ss Score
10.89
5' ss Seq
AGAGTACGG
5' ss Score
2.65
Exon sequences
Seq C1 exon
CAACCTTTTGTAACGCATTGATCCAGAGCCTGGAGTCAAACCCTCTAACCAAAATAGCCTGGAGGGCAGCAAAGCCTTTGTTGATGGGAAAAATCCTCTTTACTCCAGATTCCCCTGCAACACGCAGGATACTGAAGAAT
Seq A exon
GCTAATTCGACGTTTGAAGAGCTGGAGCGTGTCAGGAAGTTGGTCAAAGTCTGGGAAGAAGTAGGGCCCCAGATCTGGTACTTCTTTGACAAGAGCACACAGATGAGCATGATCAGA
Seq C2 exon
GACACTCTGGAGAACCCAACAGTAAAAGCTTTTTGGAATAGGCAGCTTGGTGAGGAAGGCATCACTGCTGAAGCCGTCCTGAACTTCCTCTATAACGGGCCTCGAGAGGGCCAGGCTGACGATGTGGACAACTTCAACTGGAGGGATATATTTAACATCACTGATCGTGCCCTACGCCTGGCTAATCAATATCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018010-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCTGGAGTCAAACCCTCT
R:
AAGTTGTCCACATCGTCAGCC
Band lengths:
249-366
Functional annotations
There are 2 annotated functions for this event
PMID: 11320094
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000562; ELM sequence: ANSTFE; Overlap: FULL
PMID: 11320094
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000563; ELM sequence: DNSTQM; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]