MmuEX6073830 @ mm9
Exon Skipping
Gene
ENSMUSG00000028125 | Abca4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:MGI Symbol;Acc:MGI:109424]
Coordinates
chr3:121749495-121755913:+
Coord C1 exon
chr3:121749495-121749747
Coord A exon
chr3:121751436-121751562
Coord C2 exon
chr3:121755820-121755913
Length
127 bp
Sequences
Splice sites
3' ss Seq
AATGTGGAATTTCTCCCTAGGGC
3' ss Score
8.17
5' ss Seq
CAGGTAGTC
5' ss Score
5.3
Exon sequences
Seq C1 exon
GACCAGCGATGCTCCCATTGCTGGTTTCCAGACACAGAACTGACTCGGGGAAACTGAGCCTTTCGCTCGAATTGGCAAGTGGATTCCTGTTGGGGGATGGGAGCCTTCCTGATCACTGTGTGCTCCCCGGGGGATGGGTCATTCATACTGTGAACCCTGTCTCACTTAAGCCTGTGTTTGGTATCACCTTCATGGCCTGGAAACTGAGATCTCCTCGGTACCCCGAGATAGCCAATGTATCCAGGATGTCTGG
Seq A exon
GGCATGCCTGTGTACACTTGAGCAGCAAGGGTAATGCCCTTCTGGGCTGGTGGTACTGATTCTGGGGGAGAGGAAGAGGCTGCGAGGAGGACCCACCTGCCTCTGCTAGTCGGAGAATGAATGGCAG
Seq C2 exon
ATTCGCTTTGTAGTGGAACTCGTGTGGCCTTTGTCTTTGTTTTTGGTGTTAATCTGGCTGAGGAATGCCAACCCACTCTATAGTCAGCATGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028125-'1-2,'1-1,2-2=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGGATTCCTGTTGGGGGA
R:
GAGTGGGTTGGCATTCCTCAG
Band lengths:
255-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: