MmuEX6073992 @ mm10
Exon Skipping
Gene
ENSMUSG00000051278 | Zgrf1
Description
zinc finger, GRF-type containing 1 [Source:MGI Symbol;Acc:MGI:1918893]
Coordinates
chr3:127581446-127584794:+
Coord C1 exon
chr3:127581446-127581569
Coord A exon
chr3:127583584-127584170
Coord C2 exon
chr3:127584656-127584794
Length
587 bp
Sequences
Splice sites
3' ss Seq
AGCACTATGTTTTCTTTCAGGAT
3' ss Score
9.45
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTGATTTCTCCAGAACAAAAGATCCCTGCATTGAGCCCTGCACCTACTTTTTCTTTCAACACAAGAAATGAAGACACTGTGCTTGAGCTCTCTGAGGAGTCTCTGAAAACAAGAACTCTCCCTG
Seq A exon
GATTGAAAACCATTGGTTTCCAGGACAGTAAGAACCTCCAACGGTTTCCGTTTCTAAGTGGAGCCTCAGCTCCCTTTGCCACTTTGCCAGCTGATGATGGCCCAGCTGTCTTAGATCCCTGTTCATTCATGATTGATGATGACGCGCGAGAGCCTTCTGGTTCTTCCATGTTGAACCTGTGTGAAGAGTCAGGTCTTTCATTCGACCTTGGACTTGAGGGCCAGGGTGGGACTCCAGGAGGTGTTTCACTGCTTCCTAAGAGTTCTACTCAAAGCAAGTGGCTGAAATATCAAAACCCACCCCAGTGCAACTCAACTGCTCCGAACAGACTTGCCAGCGAGGTGACCGAGGGTCTCTTTGCTGAAGCGGTGTCTGGCTTGCATTTTAGCCACACAAGTGAGAGTGAAAGTTCTGTTGACCCTGTGCGCCTGCAGATGATAAAAGGCTTGCTCCATCAACAGCAGCAGGATTTGGTTTCCAGAAAGCAAGCTTTTTCTCTGACTTTAAATCAGACTTGCAAGACTCAGGAACATGAGACTGTGTTAGGAAGCTCTGCCAGCAAGAACTGCAGAGCCAAAGATCTACAG
Seq C2 exon
GAGATAAATAATTCTGATCTGTGCTTCCCAAATGGGCAGAAAATAATATCAGCTTATCTCCCACAAAGGCAAGTTCACATACCTGCTGTTTTCCAGTCTCCTGCTCACTATAGGCAGGTCTTTACAGCTTCCATCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051278-'22-18,'22-11,26-18=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.357 A=0.213 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATTTCTCCAGAACAAAAGATCCC
R:
TATGATGGAAGCTGTAAAGACCTGC
Band lengths:
262-849
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types