RnoEX6011494 @ rn6
Exon Skipping
Gene
ENSRNOG00000036980 | Zgrf1
Description
zinc finger, GRF-type containing 1 [Source:RGD Symbol;Acc:1305834]
Coordinates
chr2:231906712-231909903:+
Coord C1 exon
chr2:231906712-231906832
Coord A exon
chr2:231908553-231909154
Coord C2 exon
chr2:231909765-231909903
Length
602 bp
Sequences
Splice sites
3' ss Seq
AGCATTATGTTTTCTTTCAGGAT
3' ss Score
9.7
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTGATTTCTCCAGAAAAGATCTCTGCATTCAGCCCTGCACCTACTTTTTCTTTCAACACAAGAAGTGAAGACTCTGAGCTTGAATTCTCTGAAGAGTCTCTGAAAACAAGAACTTTCCCTG
Seq A exon
GATTGAAAAACATTGGTTTTCAGGACAATAAGAACTTCCAAAGGTTTCCATTTTTAAGTGGAGCCTCAGTTCCCTTTGTCACTTTGCCACCAGATGATGGACCAGCAGTCTTAGATTCTTGTTCATTTATGATCGATGATGACACACGAGAGCCTTCTGGTTCTTCCAGGTTGAACCTGTGTGAAGAATCAGGTCTTTCATTTGACCTTGGACTTGAGGACCAGGATGGGATTCCACGAGATGTCTTACTGCTTCCTAAGAGTTCTACTCAAAGCAAGTGGCTGAAATATCAAAACCCATCCCACTGCAACTCAGCTGCTCTGAACAGAATTGCCAGTGAAGTGACAGAGGATCTCTCTGCTGAGGCTGTCTCTGGCTTGCATTTTAGCCACACAAGTGAGAGTGAGAGTTCTGTAGACCCTGTGCACTTGCAGATGATAAAAGGCATGCTCTATCAACAGCAGCAGGATTTTACCAGTCAAGATTTGGTTTCCAGACAGAAAGCTCTCTCTCTGAATTTAAATCAGACCTCCAGGACTGGGGAACTTCGGACTGCGTTAGGAAGCTCTGCCAGCAGTAATTGCAGAGTCAGGGATGGACAG
Seq C2 exon
GAAATAAATAATTCTGATCTATGCTTCCCAAATGGGCAGAAAATACTATCGGCTTACCTTCCTCAAAGGCAAGTTCACATACCAGCTGTTTTCCAGTCTCCTGCTCACTATCGGCAGATCTTTACGTCTTCCATCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036980-'17-12,'17-9,19-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.415 A=0.149 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000014695fB17045
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATTTCTCCAGAAAAGATCTCTGC
R:
TGGAAGACGTAAAGATCTGCCG
Band lengths:
254-856
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]