Special

MmuEX6073993 @ mm9

Exon Skipping

Gene
ENSMUSG00000051278 | 4930422G04Rik
Description
RIKEN cDNA 4930422G04 gene [Source:MGI Symbol;Acc:MGI:1918893]
Coordinates
chr3:127264393-127276243:+
Coord C1 exon
chr3:127264393-127266136
Coord A exon
chr3:127270546-127270619
Coord C2 exon
chr3:127276058-127276243
Length
74 bp
Sequences
Splice sites
3' ss Seq
GTTTGATTCTTTCATTGCAGCCA
3' ss Score
7.78
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ACAAGAAGACAGCAGACTTTCCCAGGATTCAGAGCGGTGGGAGAAGGAAGCTGTGCTTACAGATGATTCTTGTGTTCAGAAGAGCTGTGAGGATATAGGCTGCCGAGAAATTGTAGGAAAATTGCCACTCCTGTCATCTACCGATGACGAGCCTAAAGAGGCCCTCCCTGCTGATGGGACTCTGTTGTCAGAGTTCTGTGATAGAACCTGTGTGGGTTTCAATTCAGGACCTCATGGAGATGTAAAAACTGGCAAAGCACTAGAGGGACAGTGTCATAGTGACACAGGGAGCAGTTTGGACTCGTCGCTGGAGTGGAGTGAGGATGTAGCAGGGGACAGCAGAGAAGATGCTAGTCAATCTATCCAAGGCAATGCAATTAATTGTGGTGGTGTTTCACCCTCAAAGAAACCCAGAGGTGTAAACAGAAGCTTATACAGTCCTTATCTTCTAACCGCAGTCACTGACCCAGCGCCTGAGAACAGTGACCTGCTCTCAGAAG
Seq A exon
CCAGGAAATCACCTGCCATAGAAGTTTCGCGTGCTCTGCTAGAGTGTCCTTGTGAGCATCGGGCTTCTCAGCAG
Seq C2 exon
CCTGTTGAGTTTCAAGGACATCAGGTGAAAGGATCCGCTACTAGTGGTGTAATGGTCAGAGGACACAGCTTACAGCGAGGATGCACTCAGTTTCCAGACAGCATTGACTATGAAAACTTCCTGACTGATACTTGTGTTTGGACACCAGGATTGCCTAGCACTTATGGGCAGACGGACTTCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051278-'10-6,'10-5,12-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.641 A=0.160 C2=0.274
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000044432





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000044432f4769A, ENSMUSP00000044432f4770A
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr4:112612524-112612588 
HIGH PSI
HsaEX0010999
(ZGRF1)
Human
(hg19)
chr4:113533680-113533744 
HIGH PSI
HsaEX0010999
(C4orf21)
Rat
(rn6)
chr2:231895410-231895483 
ALTERNATIVE
RnoEX0101897
(Zgrf1)
Cow
(bosTau6)
chr6:14187543-14187616 
HIGH PSI
BtaEX6030019
([1])
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CCTGAGAACAGTGACCTGCTC

				
R: 
GGCAATCCTGGTGTCCAAACA

				
Band lengths: 
183-257

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]










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