HsaEX0010999 @ hg19
Exon Skipping
Gene
ENSG00000138658 | C4orf21
Description
chromosome 4 open reading frame 21 [Source:HGNC Symbol;Acc:25654]
Coordinates
chr4:113528972-113540846:-
Coord C1 exon
chr4:113538596-113540846
Coord A exon
chr4:113533680-113533744
Coord C2 exon
chr4:113528972-113529093
Length
65 bp
Sequences
Splice sites
3' ss Seq
ATTTCTTTTCTCCATTACAGTGA
3' ss Score
9.65
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
CAGTAATCTATTTTCAGAAGATGCTCAACCTCAGCCTTTTATTTTGGGAAGTGACTTAGACAAAAATGATGAACATGTTTTACCCTCAACTTCTAGTAGTGACAACAGTGTCCAACTATTAAATACCAATCAGAATCACTATGAATGTATTGCACTTGATAAATCAAATACCCACATTTCCAATTCTTTGTTTTACCCACTGGGAAAAAAGCATCTTATTTCCAAAGACACAGAAGCACATATATCTGAACCTGAAGATTTGGGAAAGATTAGAAGTCCACCCCCTGACCATGTTGAGGTTGAAACTGCCAGAGAAGGCAAACAATACTGGAATCCTAGAAATTCTTCAGAACTTTCTGGATTAGTAAATACCATTTCTATTTTAAAGTCGCTATGTGAACACAGTACTGCTTTAGACAGCTTGGAAATATTGAAAAAGAAAAATACTGTCTTTCAGCAAGGAACTCAACAGACGTATGAGCCAGATAGCCCTCCTGAAG
Seq A exon
TGAGGAAACCATTTATTACAGTAGTTTCACCAAAGTCTCCTCATCTGCACAAGGATTCTCAACAG
Seq C2 exon
ACGGGTTCTTACTCTGTCACCCAGACTAGAGTGCAGTGGCACAGTCACAGCTCACTGCAGCCTTGACCTCCAGTGCTCAAGCCATCCTCCTGCTTCAGCCTCCAAAGTAGCTGGGACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138658_MULTIEX2-6/13=5-8
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.445 A=0.841 C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF139001=GVQW=WD(100=72.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAAGGAACTCAACAGACGT
R:
TGTGGTCCCAGCTACTTTGGA
Band lengths:
167-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)