BtaEX6030019 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BPG1]
Coordinates
chr6:14182047-14189884:+
Coord C1 exon
chr6:14182047-14184228
Coord A exon
chr6:14187543-14187616
Coord C2 exon
chr6:14189834-14189884
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTGGATTTTGTCCATTATAGTTG
3' ss Score
6.65
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
TGAAAACAACCTATTTTCAGAACAGGCTCAGACTGTTCTGGGAAGTGACTTAGACAAAACAACCAATCAGGTTTTACCGTTAACCTCTAGCAGTGGCAACAGTATCCAGATATTAAATGCCAAACAGATTCACTCCAAAGAATGTACTGCACTTGATAAATCACAGACCCAAGGTTCCAATTCTTTGTGTTACCCTTTGGGAAAAACACATATTTCCAAAGACACAGAATCACATATTTCTGAAGCTGAAGAGGTGGGAAGGAGTCGAGGTTTATCCCAGGACCATATTGATGTAGAAACTTCTGGAGAAAACAAACAATATGGGAATAATCTTAGAAATTCTTCAGAAATTTCTGGATTAGTAAATAGCATTTCTCTCTTAAAATCATTGACTGAACACAGTACGGCTTTGGAAGGCTTGGAAGTATTGAAAAAGAAAAATACCTCCTTGAAACAACAAGGAACTCTGCAGACATATGAGCCAGATAGCAGTCCTGAAG
Seq A exon
TTGGGAAACCATTGACTACAATAGTTTCACAAGCTATACCAAAGTCTCCTCATCTGAACCAGGATCCTCATCAG
Seq C2 exon
ATGATAAAAGAAAATGAAGCTGAACCAAGTGAATCACGTCAGTCTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026936-'9-9,'9-8,11-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.559 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSBTAT00000049376fB170
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATTGACTGAACACAGTACGGC
R:
CTGCAAAGACTGACGTGATTCAC
Band lengths:
167-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]