MmuEX6076738 @ mm9
Exon Skipping
Gene
ENSMUSG00000038146 | Notch3
Description
Notch gene homolog 3 (Drosophila) [Source:MGI Symbol;Acc:MGI:99460]
Coordinates
chr17:32284207-32287075:-
Coord C1 exon
chr17:32286920-32287075
Coord A exon
chr17:32284710-32284935
Coord C2 exon
chr17:32284207-32284408
Length
226 bp
Sequences
Splice sites
3' ss Seq
TATTTTCCTGCTCACTGCAGACC
3' ss Score
8.75
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCCCACGATGCCAGCAGGATGTGGATGAATGTGCCGGTGCCTCACCCTGCGGCCCCCATGGTACCTGCACCAACCTGCCAGGGAATTTCAGGTGCATCTGCCACAGGGGATACACTGGCCCCTTCTGTGATCAAGACATTGACGACTGTGACCCCA
Seq A exon
ACCCGTGCCTCCATGGTGGCTCCTGCCAGGATGGCGTGGGCTCCTTTTCCTGTTCTTGCCTCGACGGCTTTGCTGGTCCTCGCTGTGCCCGAGATGTGGACGAATGTCTGAGCAGCCCCTGTGGCCCTGGCACCTGTACTGATCACGTGGCCTCCTTCACCTGTGCCTGTCCACCTGGTTATGGAGGCTTCCACTGTGAGATTGACTTGCCGGACTGCAGCCCCAG
Seq C2 exon
TTCCTGCTTCAATGGAGGGACCTGTGTGGATGGCGTGAGCTCCTTCAGCTGTCTGTGTCGCCCCGGCTACACAGGCACACACTGCCAATACGAGGCTGACCCCTGCTTTTCCCGGCCCTGTCTGCACGGGGGCATCTGCAACCCCACCCACCCAGGATTTGAATGCACCTGCCGGGAGGGCTTCACTGGGAGTCAGTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038146-'18-22,'18-21,20-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(6.2=3.8),PF0764510=EGF_CA=WD(100=73.6),PF0000822=EGF=PU(9.7=5.7)
A:
PF0000822=EGF=PD(87.1=35.5),PF0764510=EGF_CA=WD(100=47.4),PF0000822=EGF=PU(9.7=3.9)
C2:
PF0000822=EGF=PD(87.1=39.7),PF0000822=EGF=WD(100=45.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTGGATGAATGTGCCGGT
R:
GCATTCAAATCCTGGGTGGGT
Band lengths:
305-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: