RnoEX0060476 @ rn6
Exon Skipping
Gene
ENSRNOG00000004346 | Notch3
Description
notch 3 [Source:RGD Symbol;Acc:620761]
Coordinates
chr7:14170047-14172891:-
Coord C1 exon
chr7:14172736-14172891
Coord A exon
chr7:14170559-14170784
Coord C2 exon
chr7:14170047-14170248
Length
226 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCCTGCTCACTGCAGACC
3' ss Score
9.56
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCCCTCGATGCCAGCAGGATGTGGATGAATGTGCTGGTGCCTCACCTTGTGGCCCCCATGGTACCTGCACCAACCTGCCAGGGAGCTTCAGGTGCATCTGCCATGGAGGATACACTGGCCCTTTCTGTGATCAGGACATTGACGACTGTGACCCCA
Seq A exon
ACCCGTGCCTCAATGGTGGCTCCTGCCAGGATGGTGTGGGCTCCTTTTCCTGTTCTTGCCTCAGTGGCTTTGCTGGTCCTCGCTGTGCTCGGGATGTGGATGAATGTCTGAGCAGTCCCTGTGGCCCTGGCACCTGCACTGATCATGTAGCCTCTTTCACCTGTACCTGTCCACCTGGCTATGGAGGCTTCCACTGTGAGACTGACTTGCTGGACTGCAGCCCCAG
Seq C2 exon
TTCCTGTTTCAATGGAGGGACCTGTGTGGATGGCGTGAACTCCTTCAGCTGTCTGTGTCGTCCTGGCTACACAGGCACACATTGCCAATATAAGGTTGACCCCTGCTTCTCCCGGCCCTGTCTACATGGGGGCATCTGCAACCCCACCCACTCAGGATTTGAATGCACCTGCCGGGAGGGCTTCACTGGGAATCAGTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004346-'18-20,'18-18,19-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(6.2=3.8),PF0764510=EGF_CA=WD(100=73.6),PF0000822=EGF=PU(9.7=5.7)
A:
PF0000822=EGF=PD(87.1=35.5),PF0764510=EGF_CA=WD(100=59.2),PF0000822=EGF=PU(9.7=3.9)
C2:
PF0764510=EGF_CA=PD(0.1=0.0),PF0000822=EGF=PD(87.1=39.7),PF0000822=EGF=WD(100=45.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAATGTGCTGGTGCCTCA
R:
AAATCCTGAGTGGGTGGGGTT
Band lengths:
293-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]