GgaEX1040081 @ galGal4
Exon Skipping
Gene
ENSGALG00000002375 | NOTCH1
Description
notch 1 [Source:HGNC Symbol;Acc:HGNC:7881]
Coordinates
chr17:7825399-7833066:+
Coord C1 exon
chr17:7825399-7825632
Coord A exon
chr17:7831942-7832170
Coord C2 exon
chr17:7832882-7833066
Length
229 bp
Sequences
Splice sites
3' ss Seq
CATGCGTGCCCCATTTCCAGATC
3' ss Score
9.93
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
GTCAGTACTGCACCGAGGATGTGGATGAGTGCCAGCTGATGCCCAACGCCTGCCAGAACGGGGGCACCTGCCACAACAACCACGGCGGCTACAACTGCGTCTGCGTCAATGGCTGGACGGGTGAGGACTGCAGTGAGAACATCGATGACTGCGCCATGGCTGCCTGCTTCCAGGGGGCCACCTGCCATGACCGGGTGGCCTCCTTCTACTGCGAGTGTCCCCATGGGCGCACAG
Seq A exon
ATCCGTGCCACAATGGTGGCTCCTGCTCGGATGGCATTGGCACATTCTTCTGTGAGTGCCTGGCCGGCTTCCGTGGGCTCAAGTGTGAGGAGGACATCAATGAGTGTGCCAGCAACCCCTGCAAGAACGGGGCCAACTGCACCGACTGCGTCAACAGCTACACCTGCACCTGCCCCTCCGGCTTCAGCGGCATCCACTGCGAGAACAACACACCAGACTGCACTGAGAG
Seq C2 exon
GTATCGACGTCGCTCATCTCTGCAGGAACTCAGGGCTCTGTGTGGACAGTGGCAACACTCACTTCTGCCGCTGCCAGGCTGGCTACACCGGCAGCTACTGCGAGGAGCAGGTGGATGAGTGCTCCCCCAACCCCTGCCAGAACGGAGCCACCTGCACCGACTACCTGGGGGGCTATTCCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002375_MULTIEX1-13/15=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(6.5=2.5),PF0764510=EGF_CA=WD(100=51.9),PF0000822=EGF=PU(92.1=44.3)
A:
PF0000822=EGF=PD(87.1=35.1),PF0000822=EGF=WD(100=40.3),PF0000822=EGF=PU(9.7=3.9)
C2:
PF0000822=EGF=WD(100=46.8),PF0000822=EGF=PU(67.7=33.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGCACCGAGGATGTGGAT
R:
GGCAGAAGTGAGTGTTGCCAC
Band lengths:
298-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]