RnoEX6016003 @ rn6
Exon Skipping
Gene
ENSRNOG00000019322 | Notch1
Description
notch 1 [Source:RGD Symbol;Acc:3187]
Coordinates
chr3:3919530-3921270:-
Coord C1 exon
chr3:3921118-3921270
Coord A exon
chr3:3920228-3920456
Coord C2 exon
chr3:3919530-3919731
Length
229 bp
Sequences
Splice sites
3' ss Seq
TCATCCCTCTGTCCCTTCAGACC
3' ss Score
10.68
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GTCAAACCTGCGAGATCGACATCAATGAGTGTGTGAAAAGCCCGTGTCGCCATGGTGCCTCTTGCCAGAACACCAATGGCAGCTACCGCTGCCTCTGCCAGGCTGGCTACACGGGTCGCAACTGCGAGAGTGACATCGATGACTGCCGACCCA
Seq A exon
ACCCATGTCACAACGGGGGTTCCTGCACTGACGGGGTCAACGCGGCCTTCTGCGACTGCCTGCCCGGCTTCCAGGGTGCCTTCTGTGAGGAGGACATCAACGAATGCGCCAGCAATCCATGCCAAAATGGCGCCAACTGCACTGACTGCGTGGACAGCTACACGTGCACCTGCCCCACGGGCTTCAATGGCATCCATTGCGAGAACAACACACCTGACTGTACCGAGAG
Seq C2 exon
CTCCTGTTTCAATGGTGGCACCTGTGTGGATGGTATCAACTCCTTCACCTGTCTGTGCCCACCTGGCTTCACGGGCAGCTACTGCCAGTATGACGTCAATGAGTGTGACTCACGGCCCTGTCTGCATGGTGGCACCTGCCAAGACAGCTATGGTACCTATAAGTGTACCTGCCCACAGGGCTACACTGGTCTCAACTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019322-'20-20,'20-19,22-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(6.1=3.8),PF0764510=EGF_CA=WD(100=73.1),PF0000822=EGF=PU(9.7=5.8)
A:
PF0000822=EGF=PD(87.1=35.1),PF0000822=EGF=WD(100=40.3),PF0000822=EGF=PU(9.7=3.9)
C2:
PF0000822=EGF=PD(87.1=39.7),PF0000822=EGF=WD(100=45.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCTTGCCAGAACACCAAT
R:
GCAGTTGAGACCAGTGTAGCC
Band lengths:
296-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]