GgaEX1040081 @ galGal3
Exon Skipping
Gene
ENSGALG00000002375 | Q9W737_CHICK
Description
NA
Coordinates
chr17:8519878-8520921:+
Coord C1 exon
chr17:8519878-8520033
Coord A exon
chr17:8520370-8520598
Coord C2 exon
chr17:8520720-8520921
Length
229 bp
Sequences
Splice sites
3' ss Seq
CATGCGTGCCCCATTTCCAGATC
3' ss Score
9.93
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
CAGGCCAGACGTGTGAGATTGACATCAATGAGTGTGTGAAGAGCCCGTGCCGCAATGGGGCCACGTGTCAGAACACCAACGGGAGCTACCGCTGCCTGTGCCGGGTGGGCTTCGCGGGCCGCAACTGCGACACCGACATCGACGACTGCCAGCCCA
Seq A exon
ATCCGTGCCACAATGGTGGCTCCTGCTCGGATGGCATTGGCACATTCTTCTGTGAGTGCCTGGCCGGCTTCCGTGGGCTCAAGTGTGAGGAGGACATCAATGAGTGTGCCAGCAACCCCTGCAAGAACGGGGCCAACTGCACCGACTGCGTCAACAGCTACACCTGCACCTGCCCCTCCGGCTTCAGCGGCATCCACTGCGAGAACAACACACCAGACTGCACTGAGAG
Seq C2 exon
CTCCTGCTTCAATGGGGGGACCTGCGTGGATGGCATCAACACCTTCACCTGCCTCTGTCCATCCGGCTTCACGGGCAGCTACTGTGAGCACAACATCAACGAGTGTGACTCCAAGCCCTGCCTGAACGGGGGCACGTGTCAGGACAGCTATGGGACGTACAAGTGCACCTGTCCCCAGGGATACACTGGGCTCAACTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002375-'16-20,'16-19,17-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(3.1=1.9),PF0764510=EGF_CA=WD(100=71.7),PF0000822=EGF=PU(9.7=5.7)
A:
PF0000822=EGF=PD(87.1=35.1),PF0000822=EGF=WD(100=40.3),PF0000822=EGF=PU(9.7=3.9)
C2:
PF0000822=EGF=PD(87.1=39.7),PF0000822=EGF=WD(100=45.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAGACGTGTGAGATTGAC
R:
CCATAGCTGTCCTGACACGTG
Band lengths:
307-536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]