MmuEX6078499 @ mm9
Exon Skipping
Gene
ENSMUSG00000001227 | Sema6b
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B [Source:MGI Symbol;Acc:MGI:1202889]
Coordinates
chr17:56264940-56266055:-
Coord C1 exon
chr17:56265873-56266055
Coord A exon
chr17:56265640-56265789
Coord C2 exon
chr17:56264940-56265017
Length
150 bp
Sequences
Splice sites
3' ss Seq
ACTTCACCCTGTGTGCCTAGGTG
3' ss Score
9.01
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
GCACCAGCTGACCCGAGTGGCTGTGGATGTGGGTGCGGGTCCATGGGGCAATCAGACAATAGTCTTCCTTGGCTCCGAGGCTGGCACAGTCCTCAAATTTCTTGTGAAGCCCAACGCCAGTGTCTCAGGGACCACAGGGCCCAGCATCTTTTTGGAGGAGTTTGAGACCTACCGGCCAGACAG
Seq A exon
GTGTGGACGACCCAGCAGTGCTGGTGAGTGGGGGCAGCGACTTCTCAGCCTGGAGCTGGATGCAGCCTCAGGGGGCCTGCTGGCAGCCTTCCCCCGCTGTGTGGTTCGTGTTCCTGTTGCCCGTTGCCAGCTGTACTCGGGGTGCATGAA
Seq C2 exon
GAACTGTATTGGCAGCCAGGATCCATACTGCGGGTGGGCCCCTGATGGCTCCTGCATCTTCCTCAGACCAGGAACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001227-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(14.5=100)
A:
PF0140314=Sema=PD(0.1=0.0),PF0143720=PSI=PU(16.1=17.6)
C2:
PF0143720=PSI=FE(46.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGCTGTGGATGTGGGT
R:
TCCTGGTCTGAGGAAGATGCA
Band lengths:
242-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: