RnoEX6038626 @ rn6
Exon Skipping
Gene
ENSRNOG00000045998 | Sema6b
Description
semaphorin 6B [Source:RGD Symbol;Acc:69278]
Coordinates
chr9:10947896-10948778:+
Coord C1 exon
chr9:10947896-10948078
Coord A exon
chr9:10948164-10948313
Coord C2 exon
chr9:10948701-10948778
Length
150 bp
Sequences
Splice sites
3' ss Seq
GGTTCACCCCGTGTGCCCAGGTG
3' ss Score
5.78
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
GCACCAGCTGACCCGAGTGGCTGTGGATGTGGGTGCAGGCCCATGGGGCAATCAGACAATAGTCTTCCTTGGCTCTGAGGTTGGCACAGTCCTCAAATTCCTTGTGAAGCCCAATGCCAGTGTCTCAGGGACCACAGGGCCCAGCATCTTTTTGGAGGAGTTTGAGACCTACCGGCCAGACAG
Seq A exon
GTGTGGACGATCCAGCAGTGCTGGTGAGTGGGGACAACGACTTCTGAGCCTGGAGCTAGATGCTGCCTCAGGTGGCCTGCTGGCAGCCTTCCCCCGCTGTGTGGTTCGTGTTCCTGTTGCCCGCTGCCAGCTGTACTCGGGGTGCATGAA
Seq C2 exon
GAACTGCATTGGCAGCCAAGATCCATACTGCGGGTGGGCCCCCGATGGCTCCTGCATCTTCCTCAGACCAGGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000045998-'19-17,'19-16,20-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(14.5=100)
A:
PF0140314=Sema=PD(0.2=2.0),PF0143720=PSI=PU(16.1=17.6)
C2:
PF0143720=PSI=FE(46.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGCTGTGGATGTGGGT
R:
TCCTGGTCTGAGGAAGATGCA
Band lengths:
242-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]