GgaEX6051164 @ galGal3
Exon Skipping
Gene
ENSGALG00000002294 | SEMA6A
Description
NA
Coordinates
chrZ:70744684-70745879:+
Coord C1 exon
chrZ:70744684-70744860
Coord A exon
chrZ:70745563-70745703
Coord C2 exon
chrZ:70745799-70745879
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTCTCATGTTGTCAAATCAGGTG
3' ss Score
7
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
ATACCGCCTGACCAAAATCACTGTTGACTCTGCTGCTGGGCCGTATAAGAACTACACTGTGGTTTTCTTGGGATCAGAGAAGGGAATCATCCTGAAGTTCTTGGCACGGACAGGAAACAGTGGTTTCCTAAATGACAGCCTTTTCCTGGAGGAGATGAACATCTACAATCCTGAAAA
Seq A exon
GTGCAGTTACGATGGCATGGAAGACAAGCGTATTGTGGCTATGCAGCTTGACAAACCCAGCAGTGCCCTTTATGTTGCCTTCTCCACCTGTGTCATCAAGGTTCCCTTGGGGCGGTGTGAGCGTCATGGTAAATGCAAAAA
Seq C2 exon
GGCCTGCATAGCATCCAGAGACCCCTACTGCGGCTGGGTGAAGGAGAGCGGGGCGTGCACGCAGCTGGTCCTTGGTGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002294-'12-15,'12-14,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(13.7=100)
A:
PF0140314=Sema=PD(2.3=20.8),PF0143720=PSI=PU(14.3=18.8)
C2:
PF0143720=PSI=PD(69.7=82.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCCTGACCAAAATCACTGT
R:
TTAGCACCAAGGACCAGCTGC
Band lengths:
255-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]