BtaEX6039769 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020489 | SEMA6A
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A [Source:HGNC Symbol;Acc:HGNC:10738]
Coordinates
chr7:38761775-38762646:+
Coord C1 exon
chr7:38761775-38761951
Coord A exon
chr7:38762345-38762485
Coord C2 exon
chr7:38762566-38762646
Length
141 bp
Sequences
Splice sites
3' ss Seq
ATCCTGCCTTAAAAATGTAGGTG
3' ss Score
5.99
5' ss Seq
AAAGTACGT
5' ss Score
7.99
Exon sequences
Seq C1 exon
ATACCGCCTGACCAAAATCGCGGTGGACACCGCTGCTGGCCCGTATCAGAACCACACTGTGGTTTTCCTGGGATCGGAGAAGGGAATCATCTTGAAGTTCTTGGCCAGGACAGGAAACAGTGGTTTCCTAAATGACAGCCTTTTCCTGGAGGAGATGAGCGTTTACAATCCTGAAAA
Seq A exon
GTGCAGCTATGACGGAGTAGAAGACAAGAGGATCATGGGCATGCAGCTGGACAAAGCCAGCAGCTTCCTGTATGTTGCATTCTCCACTTGTGTGATCAAGGTTCCCCTTGGCCGGTGTGAGCGGCATGGCAAGTGTAAAAA
Seq C2 exon
AACCTGTATTGCTTCCAGAGACCCCTACTGTGGGTGGGTAAAGGAAGCAGGTGCGTGTGCCCATCTGTCGCCCAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020489-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(13.5=100)
A:
PF0140314=Sema=PD(3.4=31.2),PF0143720=PSI=PU(13.4=18.8)
C2:
PF0143720=PSI=FE(40.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACCGCCTGACCAAAATCGC
R:
GACAGATGGGCACACGCAC
Band lengths:
246-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]