MmuEX6001497 @ mm10
Exon Skipping
Gene
ENSMUSG00000019647 | Sema6a
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A [Source:MGI Symbol;Acc:MGI:1203727]
Coordinates
chr18:47281120-47281971:-
Coord C1 exon
chr18:47281795-47281971
Coord A exon
chr18:47281292-47281432
Coord C2 exon
chr18:47281120-47281200
Length
141 bp
Sequences
Splice sites
3' ss Seq
CTCCTACCTCATCAAACTAGGTG
3' ss Score
7.59
5' ss Seq
AAAGTATGT
5' ss Score
6.93
Exon sequences
Seq C1 exon
ATACCGCCTGACCAAAATTGCAGTAGACAACGCTGCCGGGCCATATCAGAATCACACTGTGGTTTTCCTGGGATCAGAAAAGGGAATCATCCTGAAGTTCTTGGCCAGGATAGGAAGCAGTGGTTTCCTAAATGGCAGCCTTTTCCTGGAGGAGATGAATGTTTACAACCCAGAAAA
Seq A exon
GTGCAGCTATGATGGTGTAGAAGACAAAAGGATCATGGGCATGCAGCTCGACAGAGCGAGTGGCTCACTCTATGTTGCATTCTCTACTTGTGTGATCAAGGTGCCTCTTGGCCGCTGTGAGCGACATGGGAAGTGTAAAAA
Seq C2 exon
AACCTGCATCGCCTCCAGAGACCCGTATTGTGGGTGGGTAAGGGAAAGTGGTTCCTGTGCCCATCTGTCACCCCTTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019647-'24-19,'24-18,25-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(13.5=100)
A:
PF0140314=Sema=PD(3.4=31.2),PF0143720=PSI=PU(13.8=18.8)
C2:
PF0143720=PSI=PU(41.4=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCGCCTGACCAAAATTGCA
R:
GTGACAGATGGGCACAGGAAC
Band lengths:
247-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types