RnoEX0079374 @ rn6
Exon Skipping
Gene
ENSRNOG00000004033 | Sema6a
Description
semaphorin 6A [Source:RGD Symbol;Acc:1305493]
Coordinates
chr18:41365903-41366741:-
Coord C1 exon
chr18:41366565-41366741
Coord A exon
chr18:41366075-41366215
Coord C2 exon
chr18:41365903-41365983
Length
141 bp
Sequences
Splice sites
3' ss Seq
CTCCTACCTCATCAAACTAGGTG
3' ss Score
7.59
5' ss Seq
AAAGTATGT
5' ss Score
6.93
Exon sequences
Seq C1 exon
ATACCGCCTGACCAAAATTGCAGTAGACAACACTGCTGGGCCATATGAGAATCACACTGTGGTTTTCCTGGGATCAGAAAAGGGAATCATCTTGAAGTTCTTGGCCAGGATAGGAAGCAGTGGTTTCCTAAATGGCAGCCTTTTCCTGGAGGAGATGAATGTTTACAACCCAGAAAA
Seq A exon
GTGCAGCTATGATGGTGTAGAAGACAAAAGGATCATGGGTATGCAGCTCGACAAAGCAAGTGGTTCACTTTATGTTGCATTCTCTACTTGTGTGATAAAGGTGCCTCTTGGCCGCTGTGAGCGACATGGGAAGTGTAAAAA
Seq C2 exon
AACCTGTATCGCCTCCAGAGACCCATATTGTGGGTGGGTAAAGGAAACTGGTTCCTGTGCCCATCTGTCACCCCTTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004033-'12-13,'12-12,13-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(13.5=100)
A:
PF0140314=Sema=PD(3.4=31.2),PF0143720=PSI=PU(13.6=18.8)
C2:
PF0143720=PSI=FE(40.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCGCCTGACCAAAATTGCA
R:
GTGACAGATGGGCACAGGAAC
Band lengths:
247-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]