DreEX6029185 @ danRer10
Exon Skipping
Gene
ENSDARG00000036626 | sema6ba
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Ba [Source:ZFIN;Acc:ZDB-GENE-131024-1]
Coordinates
chr2:49578983-49592469:+
Coord C1 exon
chr2:49578983-49579162
Coord A exon
chr2:49585497-49585637
Coord C2 exon
chr2:49592392-49592469
Length
141 bp
Sequences
Splice sites
3' ss Seq
GTGTATGTGTGTGTCTGTAGATG
3' ss Score
9.63
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
Exon sequences
Seq C1 exon
GTACCAGTTGAACACTATGGTGGTGGACACCGAGGCAGGCCCTCATCGCAATCGTACTGTGGTTTTCCTCGGTTCTACTAGGGGAACCGTCCTTAAGTTCCTCATCACACCCAGCCCGGAGAACCAATACTCCAATACCAATACATTCCTGGAAGAGCTGGAGGGATACAACCCTGAAAG
Seq A exon
ATGTGGTGATGACTCTGCGCAGGCGATGCAGCCGCTCTCTCTGACCTTGGACAAACCCAGTCACACGCTCCTGCTGGCCTTCCACTCGTGTGTGGTGCGAGTGCCTGTCGCTCGCTGCCACCTGCACTCCAGATGCATGAA
Seq C2 exon
AAACTGCATTGCGTCCAGAGATCCATACTGCGGCTGGACCAGAGGAAGCACCTGCACACTCCTGAGACCCGGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036626-'11-14,'11-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=0.042 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(14.1=100)
A:
PF0140314=Sema=PD(1.9=16.7),PF0143720=PSI=PU(17.6=18.8)
C2:
PF0143720=PSI=FE(51.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGTTGAACACTATGGTGGTG
R:
CAGGAGTGTGCAGGTGCTTC
Band lengths:
242-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]