BtaEX6038923 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031658 | SEMA6B
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B [Source:HGNC Symbol;Acc:HGNC:10739]
Coordinates
chr7:20797407-20798600:+
Coord C1 exon
chr7:20797407-20797589
Coord A exon
chr7:20797678-20797824
Coord C2 exon
chr7:20798523-20798600
Length
147 bp
Sequences
Splice sites
3' ss Seq
ACCAGTCTGCTCATCCCCAGGTG
3' ss Score
8.49
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
GCACCAGCTGACACGAGTGGCTGTGGACGTGGGCGCCGGCCCCTGGGGCAACCAGACTGTTATCTTCCTCGGGTCTGAGGCAGGCACGGTCCTCAAGTTCCTTGTCTGGCCCAACGCCAGTGCCTCGGGTACCACGGGACCCAGTGTCTTCCTGGAGGAATTTGAGACCTACCGGCCTGACAG
Seq A exon
GTGTGGACGGTCTGGAGATGGCGAGACAGGGCAGCGGCTGCTGAGCCTGGAGCTGGATGCGGCCTCAGGCGGCCTGCTGGCAGCCTTCCCCCGCTGTGTGGTCCGAGTGCCCGTGGCGCGCTGCCAGCAATACTCAGGATGCATGAA
Seq C2 exon
GAACTGCATTGGTAGTCAGGACCCCTACTGCGGGTGGGCCCCGGATGGCTCCTGTGTCTTCCTGAGCCCTGGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031658-'13-18,'13-17,14-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.100 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(14.5=100)
A:
PF0140314=Sema=PD(0.2=2.0),PF0143720=PSI=PU(16.1=18.0)
C2:
PF0143720=PSI=FE(46.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGACACGAGTGGCTG
R:
TCAGGAAGACACAGGAGCCAT
Band lengths:
244-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]