MmuEX6078775 @ mm10
Exon Skipping
Gene
ENSMUSG00000034116 | Vav1
Description
vav 1 oncogene [Source:MGI Symbol;Acc:MGI:98923]
Coordinates
chr17:57306107-57309483:+
Coord C1 exon
chr17:57306107-57306243
Coord A exon
chr17:57307034-57307099
Coord C2 exon
chr17:57309452-57309483
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTCCTGCCTTTTTAGGGA
3' ss Score
11.92
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
GTCTGCCTAAGATGGAAGTGTTTCAGGAATACTATGGGATCCCTCCTCCACCTGGAGCCTTTGGGCCATTTTTACGGCTCAACCCTGGGGACATTGTGGAGCTCACTAAGGCAGAGGCTGAGCACAACTGGTGGGAG
Seq A exon
GGAAGGAATACTGCTACAAATGAAGTCGGCTGGTTTCCCTGTAACAGAGTGCATCCCTATGTCCAC
Seq C2 exon
GGCCCTCCTCAGGACCTGTCTGTGCATCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034116-'31-36,'31-34,32-36
Average complexity
S
Mappability confidence:
78%=100=80%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0765312=SH3_2=PU(65.6=87.0)
A:
PF0765312=SH3_2=PD(31.1=86.4)
C2:
PF0001719=SH2=PU(21.7=90.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGCCTAAGATGGAAGTGT
R:
AGAGATGCACAGACAGGTCCT
Band lengths:
168-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types