MmuEX6078775 @ mm9
Exon Skipping
Gene
ENSMUSG00000034116 | Vav1
Description
vav 1 oncogene [Source:MGI Symbol;Acc:MGI:98923]
Coordinates
chr17:57445530-57448906:+
Coord C1 exon
chr17:57445530-57445666
Coord A exon
chr17:57446457-57446522
Coord C2 exon
chr17:57448875-57448906
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTCCTGCCTTTTTAGGGA
3' ss Score
11.92
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
GTCTGCCTAAGATGGAAGTGTTTCAGGAATACTATGGGATCCCTCCTCCACCTGGAGCCTTTGGGCCATTTTTACGGCTCAACCCTGGGGACATTGTGGAGCTCACTAAGGCAGAGGCTGAGCACAACTGGTGGGAG
Seq A exon
GGAAGGAATACTGCTACAAATGAAGTCGGCTGGTTTCCCTGTAACAGAGTGCATCCCTATGTCCAC
Seq C2 exon
GGCCCTCCTCAGGACCTGTCTGTGCATCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034116-'20-21,'20-20,21-21=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0765312=SH3_2=PU(65.6=87.0)
A:
PF0765312=SH3_2=PD(31.1=86.4)
C2:
PF0001719=SH2=PU(21.7=90.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGCCTAAGATGGAAGTGT
R:
AGAGATGCACAGACAGGTCCT
Band lengths:
168-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: