MmuEX6083402 @ mm10
Exon Skipping
Gene
ENSMUSG00000018581 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:118142247-118157397:-
Coord C1 exon
chr12:118157281-118157397
Coord A exon
chr12:118142792-118142929
Coord C2 exon
chr12:118142247-118142371
Length
138 bp
Sequences
Splice sites
3' ss Seq
ACTTTGATTTTTTTTTATAGCTT
3' ss Score
9.27
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAGTTCGAAAGTGATTATTTCAAATTTAAGTCCAGAACCCTGGATTTTGACAGAAGGCTTGGGACGCTGCTTTGCGAAGGTCTCAGCAACTGCAGTGGTTTGGAGTCTGCATTTAAG
Seq A exon
CTTTTGACCATATTTGGGAACTTTCTAGAGAAACCAGTTGTCATGGAAATGTTCAGCCCACATTACAGCACATTATTGAACATGTTTAATGCAGAGTTGGATGTGTGTAAGCAACTGTATGATGAACACATGAAGCAG
Seq C2 exon
ATTGAACACGGGCATGAAATTCTGAACAAGAATATGCCATTCACCTCTGGAAATATTAAGTGGGCCAGAATGCTCCTTGAACGCCTTCAAATGTTCTGGTCAAACTTTACATCTCTTCATTATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'12-9,'12-8,13-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(6.6=100)
A:
PF083857=DHC_N1=FE(7.8=100)
C2:
PF083857=DHC_N1=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAAATTTAAGTCCAGAACCCTG
R:
TGAAGAGATGTAAAGTTTGACCAGA
Band lengths:
218-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types