BtaEX6026640 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30457721-30466527:+
Coord C1 exon
chr4:30457721-30457837
Coord A exon
chr4:30465951-30466088
Coord C2 exon
chr4:30466403-30466527
Length
138 bp
Sequences
Splice sites
3' ss Seq
CACTTTGATTTTTTTTATAGCTT
3' ss Score
7.75
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAGTTTGAAAGTGATTATGTTGTATTTAAGTCCAAAACTCTGGATTTTGACAGAAGGCTTGGGACAGTTCTTTGTGAAGCTTTCTTCAACTGCAATGGTCTAGAAGCTGCGTTTAAG
Seq A exon
CTTTTGACCGTATTTGGGAATTTTCTTGAGAAACCAGTTGTCATGGAAATTTTCAGCCCACATTACAGCACACTTGTGCACATGTTCAGTGCAGAGTTGGATATGTGTAAGCAATTGTATAATGAACACATCAGACAG
Seq C2 exon
ATTGAACAAGGAAATGTAGTTCTTAACAAGAATATGCCATTTACTTCAGGAAATATCAAATGGGCTAAAGAGGTTCTTGACCGACTTCAGATGTTTTGGTCAAACTTTGCATCTCTCCGTTATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078-'16-14,'16-13,17-14=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(6.6=100)
A:
PF083857=DHC_N1=FE(7.8=100)
C2:
PF083857=DHC_N1=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGTATTTAAGTCCAAAACTCTGG
R:
CGGAGAGATGCAAAGTTTGACC
Band lengths:
219-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]