RnoEX6030058 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:146050306-146061357:-
Coord C1 exon
chr6:146061241-146061357
Coord A exon
chr6:146050864-146051001
Coord C2 exon
chr6:146050306-146050430
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTGATTTTTTTTCCTTATAGCTT
3' ss Score
9.81
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAGTTCGAAAGTGATTATTTCCAATTCAAGTCCAAAACCCTGGATTTTGACAGAAGGCTTGGGACGCTGCTTTGTGAGGGTCTCAGCAACTGTAGTGGTTTGGAGTCTGCGTTTAAG
Seq A exon
CTTTTGACCATATTTGGGAATTTTCTAGAGAAACCAGTTGTCATGGAAATTTTCAGCCCACATTATAGCACACTATTGAACATGTTTAATGCAGAGTTGGATATGTGTAAGCGACTGTATGATGAACACATGAAGCAG
Seq C2 exon
ATTGAACACGGGCATGAAATTCTCAACAAGAATATGCCATTCACCTCTGGAAATATTAAATGGGCCAGAATGCTCCTCGAACGCCTTCAAATGTTCTGGTCAAACTTTACATCTCTCCATTATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(6.6=100)
A:
PF083857=DHC_N1=FE(7.8=100)
C2:
PF083857=DHC_N1=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGAAAGTGATTATTTCCAATTCA
R:
TGGAGAGATGTAAAGTTTGACCAGA
Band lengths:
234-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]