HsaEX6007421 @ hg38
Exon Skipping
Gene
ENSG00000105877 | DNAH11
Description
dynein axonemal heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr7:21581905-21588636:+
Coord C1 exon
chr7:21581905-21582021
Coord A exon
chr7:21588064-21588201
Coord C2 exon
chr7:21588512-21588636
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTTCACTTTGATTTTTATAGCTT
3' ss Score
7.05
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GAGTTTGAAAGTGATTATGTGGCATTTAAGTCCAAAACTCTGGAATTTGACAGAAGGCTTGGGACAATTATTTGTGAAGCTTTCTTTAACTGCAATGGCTTAGAAGCTGCATTTAAG
Seq A exon
CTTTTGACCATATTTGGAAATTTTCTAGAGAAGCCAGTTGTCATGGAAATTTTCAGCCTACATTACAGCACACTAGTGCATATGTTTAATACAGAGCTGGATGTGTGTAAGCAACTGTATAATGAACACATGAAACAG
Seq C2 exon
ATTGAATGTGGTCATGTAGTTCTTAACAAGAACATGCCATTTACCTCAGGAAATATGAAATGGGCCCAGCAGGTTCTCCAACGACTTCAAATGTTTTGGTCAAACTTCGCATCTCTCCGTTATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877-'25-23,'25-21,26-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(6.6=100)
A:
PF083857=DHC_N1=FE(7.8=100)
C2:
PF083857=DHC_N1=FE(7.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTTGAAAGTGATTATGTGGCA
R:
AGATAACGGAGAGATGCGAAGT
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains