MmuEX6083419 @ mm9
Exon Skipping
Gene
ENSMUSG00000018581 | Dnahc11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:119320904-119343334:-
Coord C1 exon
chr12:119343208-119343334
Coord A exon
chr12:119324124-119324273
Coord C2 exon
chr12:119320904-119321137
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTTTAACATTCTGCTCTTAGGTA
3' ss Score
8.49
5' ss Seq
CATGTAAGA
5' ss Score
5.58
Exon sequences
Seq C1 exon
GCTCTCTCTTTGTGAAAAAGCCCTGGCTGAATACCTGGAAACCAAGCGGGTCACATTCCCTCGCTTCTACTTCATCTCCTCTGCAGACTTGCTGGACATTCTCTCCAAGGGAGCACAGCCGAAGCAG
Seq A exon
GTAACACACCACCTTGTCAAACTCTTTGACAGCATCTCGGATCTGCAGTTCGAAGATAATCTGGACGTGTCCACACACAAAGCAGTTGGAATGTTCAGCAAAGAAAAGGAGTATGTCCCATTCCAGGCCGGATGTGAATGCATAGGCCAT
Seq C2 exon
GTGGAAAGCTGGCTTCTGCAACTCGAACAGACCATGAAGGACACAGTGCGTCTGGCAATCACAGAAGCCATCACAGCCTATGAGGAGAAACCTAGAGAGCTCTGGATCTTTGATTTCCCAGCTCAGGTGGCTCTAACTGGATCACAAATATGGTGGACCACAGACGTAGGAATTGCCTTCAGTCGACTAGAGGAGGGCTATGAAACAGCCTTGAAGGATTTCCATAAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'28-29,'28-28,29-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(10.2=100)
A:
PF083938=DHC_N2=FE(11.9=100)
C2:
PF083938=DHC_N2=PD(6.5=34.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCGGGTCACATTCCCTC
R:
TTCCTACGTCTGTGGTCCACC
Band lengths:
257-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: