BtaEX0011566 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30507119-30528118:+
Coord C1 exon
chr4:30507119-30507245
Coord A exon
chr4:30524619-30524768
Coord C2 exon
chr4:30527885-30528118
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTTCCCGTATCTTGTCTTAGGTT
3' ss Score
10.16
5' ss Seq
CATGTAAGA
5' ss Score
5.58
Exon sequences
Seq C1 exon
GCTTTCTCTTTGTGAAAAAGCTCTTGCTCAGTACCTGGAAACCAAGCGTTTGGCTTTCCCACGCTTCTATTTCATCTCTTCCACAGACTTACTTGACATTCTCTCAAAGGGAACTCAACCTAAACAG
Seq A exon
GTTACACGCCACCTTTCCAAACTCTTCGACAGCATTGCAGATCTGCAGTTTGAAGATGATCAGGATGTCTCTGCACACAGGGCGGCTGGAATGTATAGCAAAGACAAGGAGTACGTCCCATTCCCAGCTGCGTGTGAATGCATAGGCCAT
Seq C2 exon
GTGGAAACCTGGCTCCTGCAGCTGGAGCGGACCATGCAAGAGACAGTGCGTCATTCCATCACAGAAGCCATCGCGGTCTATGAAGACAAACCCAGGGAACTGTGGATTTTTGATTTCCCAGCTCAAGTTGCACTAACTAGCTCACAAATCTGGTGGACTACAGATGTAGGAATAGCCTTCAGTAGGCTAGAGGAAGGCTACGAAACGGCCCTAAAGGATTTCCATAAAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF083938=DHC_N2=FE(57.6=100)
C2:
PF083938=DHC_N2=PD(31.8=34.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTTGCTCAGTACCTGGAA
R:
AGTGCAACTTGAGCTGGGAAA
Band lengths:
242-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development