RnoEX6030073 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145992854-146013114:-
Coord C1 exon
chr6:146012988-146013114
Coord A exon
chr6:145995626-145995775
Coord C2 exon
chr6:145992854-145993087
Length
150 bp
Sequences
Splice sites
3' ss Seq
TGTTAACATTCTGGTCTTAGGTA
3' ss Score
7.87
5' ss Seq
CATGTAAGA
5' ss Score
5.58
Exon sequences
Seq C1 exon
GCTCTCTCTTTGTGAAAAAGCCCTGGCTGAGTACCTGGAAACCAAGCGGGTCACGTTCTCCCGCTTCTACTTCATCTCCTCCGCAGACTTGCTGGACCTTCTCTCCAAGGGAGCACAGCCGAAGCAG
Seq A exon
GTAACACGACACCTTGTCAAACTCTTTGACAGCATCTCGGATCTGCAGTTCGAAGATAACCCGGAAGTGTCCACGTGCAAAGCAGTTGGAATGTTCAGCAAAGAAAAGGAGTATGTCTCATTCCAGGCCGGGTGTGAATGCATAGGCCAT
Seq C2 exon
GTGGAGAGCTGGCTTCTGCAACTGGAACAGACCATGAAGGAAACGGTTCGCCTGGCGATCGCAGAAGCCATCGCAGCCTACGAGGAGAAACCTAGAGAGCTGTGGATCTTTGATTTCCCGGCTCAAGTGGCTCTGACTGGCTCACAGATATGGTGGACCACAGATGTAGGCATTGCCTTCAGTCGGCTAGAGGAGGGCTATGAAACAGCCCTAAAGGATTTCCATAAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'32-35,'32-33,35-35=AN
Average complexity
A_C1
Mappability confidence:
90%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(10.2=100)
A:
PF083938=DHC_N2=FE(11.9=100)
C2:
PF083938=DHC_N2=PD(11.7=34.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGACTTGCTGGACCTTCTC
R:
TTCATAGCCCTCCTCTAGCCG
Band lengths:
249-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]