MmuEX6083419 @ mm10
Exon Skipping
Gene
ENSMUSG00000018581 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:118082431-118104861:-
Coord C1 exon
chr12:118104735-118104861
Coord A exon
chr12:118085651-118085800
Coord C2 exon
chr12:118082431-118082664
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTTTAACATTCTGCTCTTAGGTA
3' ss Score
8.49
5' ss Seq
CATGTAAGA
5' ss Score
5.58
Exon sequences
Seq C1 exon
GCTCTCTCTTTGTGAAAAAGCCCTGGCTGAATACCTGGAAACCAAGCGGGTCACATTCCCTCGCTTCTACTTCATCTCCTCTGCAGACTTGCTGGACATTCTCTCCAAGGGAGCACAGCCGAAGCAG
Seq A exon
GTAACACACCACCTTGTCAAACTCTTTGACAGCATCTCGGATCTGCAGTTCGAAGATAATCTGGACGTGTCCACACACAAAGCAGTTGGAATGTTCAGCAAAGAAAAGGAGTATGTCCCATTCCAGGCCGGATGTGAATGCATAGGCCAT
Seq C2 exon
GTGGAAAGCTGGCTTCTGCAACTCGAACAGACCATGAAGGACACAGTGCGTCTGGCAATCACAGAAGCCATCACAGCCTATGAGGAGAAACCTAGAGAGCTCTGGATCTTTGATTTCCCAGCTCAGGTGGCTCTAACTGGATCACAAATATGGTGGACCACAGACGTAGGAATTGCCTTCAGTCGACTAGAGGAGGGCTATGAAACAGCCTTGAAGGATTTCCATAAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'35-34,'35-32,37-34
Average complexity
S
Mappability confidence:
89%=80=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(10.2=100)
A:
PF083938=DHC_N2=FE(11.9=100)
C2:
PF083938=DHC_N2=PD(6.5=34.6)
Main Skipping Isoform:
ENSMUST00000084806fB8892
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCGGGTCACATTCCCTC
R:
TTCCTACGTCTGTGGTCCACC
Band lengths:
257-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types