MmuEX6089765 @ mm10
Exon Skipping
Gene
ENSMUSG00000035355 | Kcnh4
Description
potassium voltage-gated channel, subfamily H (eag-related), member 4 [Source:MGI Symbol;Acc:MGI:2156184]
Coordinates
chr11:100740376-100744200:-
Coord C1 exon
chr11:100744124-100744200
Coord A exon
chr11:100741293-100741998
Coord C2 exon
chr11:100740376-100740621
Length
706 bp
Sequences
Splice sites
3' ss Seq
TTTTGCTATGTTTTCAACAGATC
3' ss Score
10.87
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCCCCAGGCTCAGCCGGGAACTGGCCACAGAGGCAGCAGAGGAGGTGAAGGAAAAGGTCTGCAGGCTGAACCAAGAG
Seq A exon
ATCTCCCGTCTCAATCAGGAAGTGTCTCAGCTGAGCCGGGAGCTGCGGCAAGTGATGGGTCTCTTACAGGCCAGGCTGGGACCCCCAAGTCACACAGCTGGTCCAGCTTGGCTCCCAGACCTTCCTTGCCCCCACCAGAGACTACCATGCATCTCTCCTCATATGTCTGGACCACCACCTGGTCTCCAGAATACTACACTCGCTGTAGTCCACTGTCCAGCCAGTGTTGGGACAGTGGAGATAGGGGCCACCCCCTCAGAGCTGAGACCTTCCACGATACCACCCTATCCCTCGGAACCTGATCCTCTGGGACCCTCTCCAGCGCCAGAGGCTCCTCCCCTGACCCCAAGCCTCCTGAAGCACAGCTTCCAGTCTGGGTCAGACACATTCCACTGACCCTGGCCTTGGGCCTAGGCCTGTCTGGGGTAGGCTTTACCACCTGCCATCCAGGGAGGCGCTGGGCTCCTTGGCCTCTTGCCTTGGGGTCAGCAGCTGCCAGCTGGACTGGTTGGCTCTGGATTCTCTGGACTTTTTAAACAACGAATGGCCACATCTAACCCCGTTCCATTTTCTAAACCATCCCCCATCCTCCTCTTCTGGGAGGGGAGTCACTTGAAGCCATGGAATCCAGCAGGCATGAAATGGACCATGGCGCCCTGTTGGGCTACGCAGAGGAGATGTCTTACTTTCTCCCGAAGACTTGGAG
Seq C2 exon
GCTGTCATGCAAGGTGGTTCCTTCTGCTGTCAGCAGCTCAAAGCATTCTAGCATTACCCTTCTGCAGGTCCCACCTCCCAACATCAGCCAAACCTGCATCCCCTCCCTCCCAACATGGTCTCAACCTCAGGGAGGGTCTGGGCAACTCCCAAGCCCTCTCTGGTTTCCAGCCCTCCTTTCTCACTCAATGCCCCACCCAGGCGCACTTTTGGATAAAAAAAAAATAAATCCATATATTTTTGTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035355-'20-22,'20-21,21-22=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.962 A=0.885 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAGAGGCAGCAGAGGAG
R:
TTTATCCAAAAGTGCGCCTGG
Band lengths:
270-976
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types