MmuEX6089765 @ mm9
Exon Skipping
Gene
ENSMUSG00000035355 | Kcnh4
Description
potassium voltage-gated channel, subfamily H (eag-related), member 4 [Source:MGI Symbol;Acc:MGI:2156184]
Coordinates
chr11:100601690-100605514:-
Coord C1 exon
chr11:100605438-100605514
Coord A exon
chr11:100602607-100603312
Coord C2 exon
chr11:100601690-100601935
Length
706 bp
Sequences
Splice sites
3' ss Seq
TTTTGCTATGTTTTCAACAGATC
3' ss Score
10.87
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCCCCAGGCTCAGCCGGGAACTGGCCACAGAGGCAGCAGAGGAGGTGAAGGAAAAGGTCTGCAGGCTGAACCAAGAG
Seq A exon
ATCTCCCGTCTCAATCAGGAAGTGTCTCAGCTGAGCCGGGAGCTGCGGCAAGTGATGGGTCTCTTACAGGCCAGGCTGGGACCCCCAAGTCACACAGCTGGTCCAGCTTGGCTCCCAGACCTTCCTTGCCCCCACCAGAGACTACCATGCATCTCTCCTCATATGTCTGGACCACCACCTGGTCTCCAGAATACTACACTCGCTGTAGTCCACTGTCCAGCCAGTGTTGGGACAGTGGAGATAGGGGCCACCCCCTCAGAGCTGAGACCTTCCACGATACCACCCTATCCCTCGGAACCTGATCCTCTGGGACCCTCTCCAGCGCCAGAGGCTCCTCCCCTGACCCCAAGCCTCCTGAAGCACAGCTTCCAGTCTGGGTCAGACACATTCCACTGACCCTGGCCTTGGGCCTAGGCCTGTCTGGGGTAGGCTTTACCACCTGCCATCCAGGGAGGCGCTGGGCTCCTTGGCCTCTTGCCTTGGGGTCAGCAGCTGCCAGCTGGACTGGTTGGCTCTGGATTCTCTGGACTTTTTAAACAACGAATGGCCACATCTAACCCCGTTCCATTTTCTAAACCATCCCCCATCCTCCTCTTCTGGGAGGGGAGTCACTTGAAGCCATGGAATCCAGCAGGCATGAAATGGACCATGGCGCCCTGTTGGGCTACGCAGAGGAGATGTCTTACTTTCTCCCGAAGACTTGGAG
Seq C2 exon
GCTGTCATGCAAGGTGGTTCCTTCTGCTGTCAGCAGCTCAAAGCATTCTAGCATTACCCTTCTGCAGGTCCCACCTCCCAACATCAGCCAAACCTGCATCCCCTCCCTCCCAACATGGTCTCAACCTCAGGGAGGGTCTGGGCAACTCCCAAGCCCTCTCTGGTTTCCAGCCCTCCTTTCTCACTCAATGCCCCACCCAGGCGCACTTTTGGATAAAAAAAAAATAAATCCATATATTTTTGTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035355-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.962 A=0.885 C2=NA
Domain overlap (PFAM):
C1:
PF0148612=K-box=PU(41.9=69.2)
A:
PF0148612=K-box=PD(53.5=17.4)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAGAGGCAGCAGAGGAG
R:
TTTATCCAAAAGTGCGCCTGG
Band lengths:
270-976
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: