RnoEX6049706 @ rn6
Exon Skipping
Gene
ENSRNOG00000018790 | Kcnh4
Description
potassium voltage-gated channel subfamily H member 4 [Source:RGD Symbol;Acc:621415]
Coordinates
chr10:88647575-88651686:-
Coord C1 exon
chr10:88651610-88651686
Coord A exon
chr10:88648850-88649560
Coord C2 exon
chr10:88647575-88647795
Length
711 bp
Sequences
Splice sites
3' ss Seq
TTTTGCTATATTTTCAACAGATT
3' ss Score
9.45
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCCCTAGGCTCAGCCGGGAACTGGCCACAGAGGCAGCAGAGGAGGTGAAGGAAAAGGTCTGCAGGCTGAACCAAGAG
Seq A exon
ATTTCCAGACTCAACCAGGAAGTGTCTCAGCTGAGCCGGGAGCTTCGCCAAGTGATGGGCCTCTTACAGGCCAGGCTGGGTCCCCCAAGTCACCCACCTGACTCCACTTGGCTCCCAGACCTTCCTTGTCCCCATCAGAGACCGCCATGCATCTCTCCTCATATGTCTGGACCTCCACCTGGTCTCCAGAATACTACACTTGCTGTAGTCCACTGTCCAGCCAGTGTTGGGACAGTGGAGATAGGGGCCACCCCCTCAGAGCTGAGGTCTTCCATGGTGCCACCCTTTCCCTCAGAACCTGATCCTCTTGGACCCTCTCCAGTGCCAGAGGCTTCTCCTCTGACCCCAAGCCTCCTGAAGCACAGCTTCCAGTCTGGGTCAGACACATTCCACTGACCCTGGCCTTGGGCCCAGGCCTGTCTGGGGTGGGCTTAATTACCTGCCATCCAGGGAGGAGCTGGGCTCCTTGGCCTCTTGCCTTGGGGTCAGCAGCTGCCAGCTGGTCTGGTTGGCTCTGGATTCTCTGGACTTTTTAACAATGAGTGGCCACATCTAACCCCGTTCCATTTTCTAAACCATCCCCCCCACCCGTCCTACTCTTGTGGGAGGGGAGTCACCTGAAGCCGTGGAATCCAGCAGGCATGAAATGGACCATGGTGCCTTGTTGGGCTACGCAGAGGAGATGTCTTACTTTCTCCCCACGACTTGGAG
Seq C2 exon
GCTGTCATGCAAGGTGGTCCCTTCTGCTGCCAGCAGCTCAAAGCATTCTAGCTTTACCCTTCTGCAGTTCCCACCTCCAAACATCAGTCATATCTGCCCCCCTCCCTCCCAACATGGTCTCGACCTCAATGAGGATCTGGGCAACTCACAAACCCTCTCTGGTTTCCAGCTCCCCTTTCTCACTAAACACCCCAGGCTCACTTTTGGATAGAAAATAAATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018790-'19-19,'19-18,20-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.931 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAGAGGCAGCAGAGGAG
R:
TATTTTCTATCCAAAAGTGAGCCTGG
Band lengths:
270-981
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]