MmuEX6089905 @ mm10
Exon Skipping
Gene
ENSMUSG00000078650 | G6pc
Description
glucose-6-phosphatase, catalytic [Source:MGI Symbol;Acc:MGI:95607]
Coordinates
chr11:101372702-101377903:+
Coord C1 exon
chr11:101372702-101372807
Coord A exon
chr11:101374590-101374683
Coord C2 exon
chr11:101376288-101377903
Length
94 bp
Sequences
Splice sites
3' ss Seq
GGTTGCCTATTGTCTTGCAGGTG
3' ss Score
10.83
5' ss Seq
CAGGTCGTG
5' ss Score
-0.78
Exon sequences
Seq C1 exon
GAAGTCCCTCTGGCCATGCCATGGGCGCAGCAGGTGTATACTATGTTATGGTCACTTCTACTCTTGCTATCTTTCGAGGAAAGAAAAAGCCAACGTATGGATTCCG
Seq A exon
GTGTTTGAACGTCATCTTGTGGTTGGGATTCTGGGCTGTGCAGCTGAACGTCTGTCTGTCCCGGATCTACCTTGCTGCTCACTTTCCCCACCAG
Seq C2 exon
GCATTGCTGTGGCTGAAACTTTCAGCCACATCCGGGGCATCTACAATGCCAGCCTCCGGAAGTATTGTCTCATCACCATCTTCTTGTTTGGTTTCGCGCTTGGATTCTACCTGCTACTAAAAGGGCTAGGGGTGGACCTCCTGTGGACTTTGGAGAAAGCTAAGAGATGGTGTGAGCGGCCAGAATGGGTCCACCTTGACACTACACCCTTTGCCAGCCTCTTCAAAAACCTGGGAACCCTCTTGGGGTTGGGGCTGGCCCTCAACTCCAGCATGTACCGGAAGAGCTGCAAGGGAGAACTCAGCAAGTTGCTCCCATTCCGCTTCGCCTGCATTGTGGCTTCCTTGGTCCTCCTGCATCTCTTTGACTCTCTGAAGCCCCCATCCCAGGTTGAGTTGATCTTCTACATCTTGTCTTTCTGCAAGAGCGCAACAGTTCCCTTTGCATCTGTCAGTCTTATCCCATACTGCCTAGCCCGGATCCTGGGACAGACACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078650-'4-8,'4-7,5-8
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(24.1=100)
A:
PF0156916=PAP2=FE(26.9=100)
C2:
PF0156916=PAP2=PD(8.3=7.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGAAAGAAAAAGCCAACGT
R:
GGTCCACCCCTAGCCCTTTTA
Band lengths:
170-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types