MmuEX6089905 @ mm9
Exon Skipping
Gene
ENSMUSG00000078650 | G6pc
Description
glucose-6-phosphatase, catalytic [Source:MGI Symbol;Acc:MGI:95607]
Coordinates
chr11:101234016-101239217:+
Coord C1 exon
chr11:101234016-101234121
Coord A exon
chr11:101235904-101236019
Coord C2 exon
chr11:101237602-101239217
Length
116 bp
Sequences
Splice sites
3' ss Seq
GGTTGCCTATTGTCTTGCAGGTG
3' ss Score
10.83
5' ss Seq
CAGGTATCA
5' ss Score
7.33
Exon sequences
Seq C1 exon
GAAGTCCCTCTGGCCATGCCATGGGCGCAGCAGGTGTATACTATGTTATGGTCACTTCTACTCTTGCTATCTTTCGAGGAAAGAAAAAGCCAACGTATGGATTCCG
Seq A exon
GTGTTTGAACGTCATCTTGTGGTTGGGATTCTGGGCTGTGCAGCTGAACGTCTGTCTGTCCCGGATCTACCTTGCTGCTCACTTTCCCCACCAGGTCGTGGCTGGAGTCTTGTCAG
Seq C2 exon
GCATTGCTGTGGCTGAAACTTTCAGCCACATCCGGGGCATCTACAATGCCAGCCTCCGGAAGTATTGTCTCATCACCATCTTCTTGTTTGGTTTCGCGCTTGGATTCTACCTGCTACTAAAAGGGCTAGGGGTGGACCTCCTGTGGACTTTGGAGAAAGCTAAGAGATGGTGTGAGCGGCCAGAATGGGTCCACCTTGACACTACACCCTTTGCCAGCCTCTTCAAAAACCTGGGAACCCTCTTGGGGTTGGGGCTGGCCCTCAACTCCAGCATGTACCGGAAGAGCTGCAAGGGAGAACTCAGCAAGTTGCTCCCATTCCGCTTCGCCTGCATTGTGGCTTCCTTGGTCCTCCTGCATCTCTTTGACTCTCTGAAGCCCCCATCCCAGGTTGAGTTGATCTTCTACATCTTGTCTTTCTGCAAGAGCGCAACAGTTCCCTTTGCATCTGTCAGTCTTATCCCATACTGCCTAGCCCGGATCCTGGGACAGACACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078650-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(24.1=100)
A:
PF0156916=PAP2=FE(26.9=100)
C2:
PF0156916=PAP2=PD(8.3=7.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGAAAGAAAAAGCCAACGT
R:
GCTGGCAAAGGGTGTAGTGTC
Band lengths:
250-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: