RnoEX0037304 @ rn6
Exon Skipping
Gene
ENSRNOG00000051171 | G6pc
Description
glucose-6-phosphatase, catalytic subunit [Source:RGD Symbol;Acc:2644]
Coordinates
chr10:89290649-89296213:+
Coord C1 exon
chr10:89290649-89290754
Coord A exon
chr10:89292746-89292861
Coord C2 exon
chr10:89294573-89296213
Length
116 bp
Sequences
Splice sites
3' ss Seq
GGCTGCCTATTGTCTTGCAGGTG
3' ss Score
11.12
5' ss Seq
CAGGTATCA
5' ss Score
7.33
Exon sequences
Seq C1 exon
GGAGTCCCTCGGGCCATGCCATGGGCACAGCAGGTGTATACTACGTTATGGTTACTTCTACTCTCGCTATCTTTCGTGGAAAGAAAAAGTCAACGTATGGATTCCG
Seq A exon
GTGCTTGAATGTCGTCTTGTGGTTGGGATACTGGGCTGTGCAGCTGAACGTCTGTCTGTCCCGGATCTACCTTGCGGCTCACTTTCCCCATCAGGTGGTGGCTGGAGTCTTGTCAG
Seq C2 exon
GCATTGCTGTGGCTGAAACTTTCAGCCACATCCGGGGCATCTACAATGCCAGCCTCCAGAGGTACTGTCTCATCACCTTCTTCCTGTTTGGTTTCGCACTTGGATTTTACCTGCTGCTAAAGGGGCTAGGGGTGGACCTCCTGTGGACTTTGGAGAAGGCCAAGAGATGGTGTGAGCGCCCCGAGTGGGTCCACCTTGACACTACACCCTTTGCCAGCCTCTTCAAAAACCTGGGGACCCTCTTGGGGTTGGGGCTGGCCCTCAACTCCAGCATGTACCGCAAGAGCTGCAAAGGAGAACTGCGCAAGTCGCTCCCATTCCGTTTGGCCTGCATCGTGGCCTCCTTGGGCCTGCTGCATCTCTTTGACTCGCTGAAGCCCCCGTCCCAGATTGAGTCGATCTTCTACATCTTGTCTTTCTGCAAGAGTGCGACCGTCCCCTTTGCATCTGTCAGTCTTATCCCCTACTGCCTAGCCCGGCTCCTGGGACAGACACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051171_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(24.1=100)
A:
PF0156916=PAP2=FE(26.9=100)
C2:
PF0156916=PAP2=PD(8.3=7.0)
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTCGCTATCTTTCGTGGA
R:
TGTAGTGTCAAGGTGGACCCA
Band lengths:
253-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]