DreEX6017455 @ danRer10
Exon Skipping
Gene
ENSDARG00000014967 | g6pcb
Description
glucose-6-phosphatase b, catalytic subunit [Source:ZFIN;Acc:ZDB-GENE-081223-2]
Coordinates
chr3:32774368-32777182:-
Coord C1 exon
chr3:32777083-32777182
Coord A exon
chr3:32776517-32776632
Coord C2 exon
chr3:32774368-32774885
Length
116 bp
Sequences
Splice sites
3' ss Seq
GCTTGTGCCTTATACTGTAGGTG
3' ss Score
8.5
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GAAGCCCCTCGGGACATGCAATGGGCGCTGCAGGGGTCTACTATGCCATGGTTACGTCACTGCTGCTGAATTTCAAGGAGTGTGACCCTCTGAAAAGATG
Seq A exon
GTGCTTGCAGGCTCTTCTTTGGGCTGTTTTCTGGAGTGTGCAGGTGTGTGTCAGTCTTTCTCGAGTCTTCATTGCTGCTCATTTCCCACATCAGGTCATTGCTGGAGTTTTTTCAG
Seq C2 exon
GCATTGCAGTGGCCAAAGCTTTCAACAGAGTGTCCTGGATATACTCAGCCAGCTTGAAGGGTTACATGCACAGCATCCTCTGTCTGGTGTTTGTTGCGCTGGGGCTTTATGCGGTGTTGGATGCTGCTTCAATTGACCCCTACTGGAGCCTAATGAAGGCACAGAAGTGGTGTATTCAATCTGAATGGGTCCATCTGGACACCACACCCTTCGCTGGCCTCCTCCGCAACACAGGGGCCCTGTTCGGCCTGGGACTGAGCCTCCATTTGCCTACTCATGGTGATTTGCAAAAAAATAAGAACTGTGGAAACAGCGCCTTTTACAGACTGACCTGTACAGCTGCAACCCTGCCCCTGCTGAGCCTCTTAGACTCGTTCAGACCACCCACCAGCACTCATGCTCTCTTCTACACGCTGTCTTTCTGTAAGAGTGCCACAGTGCCTCTAACTACAATCAGTTTTGTACCTTACTGCATAAGCACACTAGCAAATGCGTACCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014967-'2-5,'2-3,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(22.3=100)
A:
PF0156916=PAP2=FE(26.4=100)
C2:
PF0156916=PAP2=PD(10.1=8.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGGGGTCTACTATGCCAT
R:
ACACCACTTCTGTGCCTTCAT
Band lengths:
245-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]