MmuEX6097652 @ mm9
Exon Skipping
Gene
ENSMUSG00000058579 | Cela2a
Description
chymotrypsin-like elastase family, member 2A [Source:MGI Symbol;Acc:MGI:95316]
Coordinates
chr4:141378145-141382075:-
Coord C1 exon
chr4:141381858-141382075
Coord A exon
chr4:141381445-141381539
Coord C2 exon
chr4:141378145-141378242
Length
95 bp
Sequences
Splice sites
3' ss Seq
TCTCAATCCTCTCTTCACAGCCC
3' ss Score
8.82
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GGGAATGGAAAAATAAACAAAAACAAGAAAACCAAACATTTGGACTCCAGCCCTTTATTGCACTGGACTTTGGGAAAATCTCCACCTTGCATATTCCTCCAGCGTCTCTGGCTGATAAGGCCACTCATAAAAAGGAAGCTTGGCCAGGGCCAGACCTACAGACGTCCAGGGACACACCATGATCAGGACACTGCTGCTATCTGCCTTGGTGGCTGGAG
Seq A exon
CCCTCAGCTGTGGGTACCCCACTTATGAGGTGGAGGATGATGTGAGCAGGGTAGTTGGGGGTCAAGAGGCCACACCCAACACCTGGCCCTGGCAG
Seq C2 exon
GTCTCCCTGCAGGTCCTTTCCTCCGGAAGGTGGCGCCACAACTGCGGAGGCTCCCTGGTGGCCAACAACTGGGTTCTGACAGCTGCCCATTGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058579-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.062 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(6.0=43.8)
C2:
PF0008921=Trypsin=FE(13.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAAGGAAGCTTGGCCAGGG
R:
TGTCAGAACCCAGTTGTTGGC
Band lengths:
171-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: