MmuEX6097652 @ mm10
Exon Skipping
Gene
ENSMUSG00000058579 | Cela2a
Description
chymotrypsin-like elastase family, member 2A [Source:MGI Symbol;Acc:MGI:95316]
Coordinates
chr4:141822230-141826160:-
Coord C1 exon
chr4:141825943-141826160
Coord A exon
chr4:141825530-141825624
Coord C2 exon
chr4:141822230-141822327
Length
95 bp
Sequences
Splice sites
3' ss Seq
TCTCAATCCTCTCTTCACAGCCC
3' ss Score
8.82
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GGGAATGGAAAAATAAACAAAAACAAGAAAACCAAACATTTGGACTCCAGCCCTTTATTGCACTGGACTTTGGGAAAATCTCCACCTTGCATATTCCTCCAGCGTCTCTGGCTGATAAGGCCACTCATAAAAAGGAAGCTTGGCCAGGGCCAGACCTACAGACGTCCAGGGACACACCATGATCAGGACACTGCTGCTATCTGCCTTGGTGGCTGGAG
Seq A exon
CCCTCAGCTGTGGGTACCCCACTTATGAGGTGGAGGATGATGTGAGCAGGGTAGTTGGGGGTCAAGAGGCCACACCCAACACCTGGCCCTGGCAG
Seq C2 exon
GTCTCCCTGCAGGTCCTTTCCTCCGGAAGGTGGCGCCACAACTGCGGAGGCTCCCTGGTGGCCAACAACTGGGTTCTGACAGCTGCCCATTGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058579-'0-3,'0-0,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.062 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(6.0=43.8)
C2:
PF0008921=Trypsin=FE(13.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAAGGAAGCTTGGCCAGGG
R:
TGTCAGAACCCAGTTGTTGGC
Band lengths:
171-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types